PUM1 (Sorex araneus)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ENSSARG00000003055 T24266_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.982
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.982
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.897
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.897
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.897
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.897
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.897
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.781
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.781
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.781
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.781
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.781
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.781
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.781
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSARP00000002795 PUF 884 918
ENSSARP00000002795 PUF 920 952
ENSSARP00000002795 PUF 956 987
ENSSARP00000002795 PUF 994 1028
ENSSARP00000002795 PUF 1030 1064
ENSSARP00000002795 PUF 1066 1100
ENSSARP00000002795 PUF 1102 1132
ENSSARP00000002795 PUF 1148 1179

Links

Other PUF family RBPs
Other Sorex araneus RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R012380 Ailuropoda melanoleuca Ame_R012380 I 0.996
PUM1 Canis familiaris ENSCAFG00000011205 I 0.996
PUM1 Vicugna pacos ENSVPAG00000005902 I 0.996
LOC100415491 Callithrix jacchus ENSCJAG00000006035 I 0.993
Pum1 Mus musculus ENSMUSG00000028580 I 0.993
Pum1 Rattus norvegicus ENSRNOG00000011709 I 0.993
PUM1 Loxodonta africana ENSLAFG00000003178 I 0.993
PUM1 Pan troglodytes ENSPTRG00000000453 I 0.993
Q3YAQ1_MACMU Macaca mulatta ENSMMUG00000013520 I 0.993
PUM1 Homo sapiens ENSG00000134644 D 0.993
PUM1 Erinaceus europaeus ENSEEUG00000003871 I 0.993
PUM1 Sus scrofa ENSSSCG00000003591 I 0.989
PUM1 Bos taurus ENSBTAG00000018979 I 0.985
PUM1 Pteropus vampyrus ENSPVAG00000005207 I 0.985
PUM1 Tursiops truncatus ENSTTRG00000007436 I 0.985
PUM1 Oryctolagus cuniculus ENSOCUG00000008641 I 0.985
ENSPPYG00000001621 Pongo pygmaeus ENSPPYG00000001621 I 0.982
PUM1 Equus caballus ENSECAG00000021369 I 0.978
PUM1 Microcebus murinus ENSMICG00000007713 I 0.974
PUM1 Monodelphis domestica ENSMODG00000017067 I 0.971
PUM1_CHICK Gallus gallus ENSGALG00000000597 I 0.971
PUM1 Meleagris gallopavo ENSMGAG00000000724 I 0.971
BAC57980 Xenopus laevis BAC57980 I 0.967
AAH80379 Xenopus laevis AAH80379 I 0.967
AAL14121 Xenopus laevis AAL14121 I 0.963
PUM1 Anolis carolinensis ENSACAG00000000682 I 0.960
BAB20864 Xenopus laevis BAB20864 I 0.941
PUM1 Gasterosteus aculeatus ENSGACG00000005717 I 0.941
PUM1 Takifugu rubripes ENSTRUG00000013121 I 0.941
PUM1 Oryzias latipes ENSORLG00000011482 I 0.934
PUM1 Tetraodon nigroviridis ENSTNIG00000016983 I 0.922
PUM2 Meleagris gallopavo ENSMGAG00000014040 I 0.901
PUM2 Homo sapiens ENSG00000055917 D 0.897
PUM2 Pan troglodytes ENSPTRG00000011692 I 0.897
Pum2 Mus musculus ENSMUSG00000020594 D 0.897
PUM2 Gorilla gorilla ENSGGOG00000011374 I 0.897
PUM2 Canis familiaris ENSCAFG00000003839 I 0.897
PUM2 Oryctolagus cuniculus ENSOCUG00000017908 I 0.897
PUM2 Loxodonta africana ENSLAFG00000009278 I 0.897
Ame_R002800 Ailuropoda melanoleuca Ame_R002800 I 0.897
PUM2 Callithrix jacchus ENSCJAG00000007450 I 0.897
PUM2 Vicugna pacos ENSVPAG00000005056 I 0.897
ENSPPYG00000012617 Pongo pygmaeus ENSPPYG00000012617 I 0.895
PUM2 Sus scrofa ENSSSCG00000008600 I 0.895
PUM2 Bos taurus ENSBTAG00000011155 I 0.895
PUM2 Equus caballus ENSECAG00000021930 I 0.895
PUM2 Tupaia belangeri ENSTBEG00000008729 I 0.894
Pum2 Rattus norvegicus ENSRNOG00000006180 I 0.894
PUM2 Anolis carolinensis ENSACAG00000010491 I 0.893
PUM2 Taeniopygia guttata ENSTGUG00000013149 I 0.891
Q2VB18_CHICK Gallus gallus ENSGALG00000016481 I 0.891
ENSOANG00000003230 Ornithorhynchus anatinus ENSOANG00000003230 I 0.891
PUM2 Cavia porcellus ENSCPOG00000007075 I 0.887
PUM2 Tarsius syrichta ENSTSYG00000014463 I 0.875
pum2 Xenopus tropicalis ENSXETG00000008903 I 0.872
PUM2 Monodelphis domestica ENSMODG00000009811 I 0.871
PUM2 Tursiops truncatus ENSTTRG00000004887 I 0.871
PUM2 Takifugu rubripes ENSTRUG00000018167 I 0.871
PUM2 Oryzias latipes ENSORLG00000012611 I 0.868
PUM2 Gasterosteus aculeatus ENSGACG00000009670 I 0.868
e_gw.54.41.1 Nematostella vectensis e_gw.54.41.1 I 0.809
XP_001187223.1 Strongylocentrotus purpuratus XP_001187223.1 I 0.806
XP_794621.2 Strongylocentrotus purpuratus XP_794621.2 I 0.806
estExt_Genewise1Plus.C_4390035 Capitella teleta estExt_Genewise1Plus.C_4390035 I 0.791
estExt_Genewise1Plus.C_sca_670070 Lottia gigantea estExt_Genewise1Plus.C_sca_670070 I 0.789
PASA_GEN_0800110 Daphnia pulex PASA_GEN_0800110 I 0.789
PHUM490070 Pediculus humanus PHUM490070 I 0.787
nasonia_NCBI_hmm823294 Nasonia vitripennis nasonia_NCBI_hmm823294 I 0.781
pum Drosophila melanogaster FBgn0003165 D 0.781
GM26283 Drosophila sechellia FBgn0181138 I 0.781
amel4_ncbi_hmm4895 Apis mellifera amel4_ncbi_hmm4895 I 0.778
AAEL012420 Aedes aegypti AAEL012420 I 0.777
CpipJ_CPIJ016844 Culex pipiens CpipJ_CPIJ016844 I 0.777
GK14049 Drosophila willistoni FBgn0216055 I 0.777
GE24797 Drosophila yakuba FBgn0241899 I 0.777
GG17394 Drosophila erecta FBgn0109620 I 0.777
GF18428 Drosophila ananassae FBgn0095446 I 0.777
CPIJ016844 Culex quinquefasciatus CPIJ016844 I 0.777
GH15257 Drosophila grimshawi FBgn0122732 I 0.773
GI22503 Drosophila mojavensis FBgn0145231 I 0.773
GA27465-RA Drosophila pseudoobscura FBgn0248832 I 0.773
GJ10105 Drosophila virilis FBgn0197393 I 0.770
AGAP003914 Anopheles gambiae AGAP003914 I 0.769
GL22345 Drosophila persimilis FBgn0159937 I 0.766
BGIBMGA003401 Bombyx mori BGIBMGA003401 I 0.763
DGIL_AUG5s1082g1t1 Acyrtosiphon pisum DGIL_AUG5s1082g1t1 I 0.763
e_gw1.9.429.1 Trichoplax adhaerens e_gw1.9.429.1 I 0.759
ENSCING00000003888 Ciona intestinalis ENSCING00000003888 I 0.756