PUM1 (Gasterosteus aculeatus)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ENSGACG00000005717 T24201_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.934
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.934
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.901
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.901
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.901
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.901
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.901
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.770
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.770
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.770
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.770
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.770
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.770
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.770
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000007558 PUF 840 874
ENSGACP00000007558 PUF 876 908
ENSGACP00000007558 PUF 912 944
ENSGACP00000007558 PUF 950 984
ENSGACP00000007558 PUF 986 1020
ENSGACP00000007558 PUF 1022 1056
ENSGACP00000007558 PUF 1058 1088
ENSGACP00000007558 PUF 1104 1135
ENSGACP00000007561 PUF 818 852
ENSGACP00000007561 PUF 854 886
ENSGACP00000007561 PUF 890 922
ENSGACP00000007561 PUF 928 962
ENSGACP00000007561 PUF 964 998
ENSGACP00000007561 PUF 1000 1034
ENSGACP00000007561 PUF 1036 1066
ENSGACP00000007561 PUF 1082 1113

Links

Other PUF family RBPs
Other Gasterosteus aculeatus RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PUM1 Takifugu rubripes ENSTRUG00000013121 I 0.996
PUM1 Tetraodon nigroviridis ENSTNIG00000016983 I 0.978
PUM1 Oryzias latipes ENSORLG00000011482 I 0.974
PUM1 Sus scrofa ENSSSCG00000003591 I 0.948
PUM1 Pan troglodytes ENSPTRG00000000453 I 0.948
Q3YAQ1_MACMU Macaca mulatta ENSMMUG00000013520 I 0.948
LOC100415491 Callithrix jacchus ENSCJAG00000006035 I 0.948
PUM1 Homo sapiens ENSG00000134644 D 0.948
PUM1 Sorex araneus ENSSARG00000003055 I 0.941
Ame_R012380 Ailuropoda melanoleuca Ame_R012380 I 0.941
PUM1 Canis familiaris ENSCAFG00000011205 I 0.941
PUM1 Vicugna pacos ENSVPAG00000005902 I 0.941
PUM1 Loxodonta africana ENSLAFG00000003178 I 0.937
PUM1 Erinaceus europaeus ENSEEUG00000003871 I 0.937
Pum1 Mus musculus ENSMUSG00000028580 I 0.937
Pum1 Rattus norvegicus ENSRNOG00000011709 I 0.937
PUM1 Microcebus murinus ENSMICG00000007713 I 0.934
PUM1 Meleagris gallopavo ENSMGAG00000000724 I 0.934
PUM1_CHICK Gallus gallus ENSGALG00000000597 I 0.934
PUM1 Monodelphis domestica ENSMODG00000017067 I 0.934
PUM1 Bos taurus ENSBTAG00000018979 I 0.934
ENSPPYG00000001621 Pongo pygmaeus ENSPPYG00000001621 I 0.934
PUM1 Tursiops truncatus ENSTTRG00000007436 I 0.933
PUM1 Oryctolagus cuniculus ENSOCUG00000008641 I 0.933
AAH80379 Xenopus laevis AAH80379 I 0.930
BAC57980 Xenopus laevis BAC57980 I 0.930
PUM1 Pteropus vampyrus ENSPVAG00000005207 I 0.930
PUM1 Anolis carolinensis ENSACAG00000000682 I 0.927
AAL14121 Xenopus laevis AAL14121 I 0.927
PUM1 Equus caballus ENSECAG00000021369 I 0.926
BAB20864 Xenopus laevis BAB20864 I 0.916
PUM2 Canis familiaris ENSCAFG00000003839 I 0.901
PUM2 Homo sapiens ENSG00000055917 D 0.901
PUM2 Vicugna pacos ENSVPAG00000005056 I 0.901
PUM2 Pan troglodytes ENSPTRG00000011692 I 0.901
Pum2 Mus musculus ENSMUSG00000020594 D 0.901
PUM2 Gorilla gorilla ENSGGOG00000011374 I 0.901
PUM2 Oryctolagus cuniculus ENSOCUG00000017908 I 0.901
PUM2 Callithrix jacchus ENSCJAG00000007450 I 0.901
Ame_R002800 Ailuropoda melanoleuca Ame_R002800 I 0.901
PUM2 Loxodonta africana ENSLAFG00000009278 I 0.897
PUM2 Tupaia belangeri ENSTBEG00000008729 I 0.897
Pum2 Rattus norvegicus ENSRNOG00000006180 I 0.894
PUM2 Meleagris gallopavo ENSMGAG00000014040 I 0.890
PUM2 Bos taurus ENSBTAG00000011155 I 0.887
PUM2 Equus caballus ENSECAG00000021930 I 0.887
PUM2 Sus scrofa ENSSSCG00000008600 I 0.887
ENSPPYG00000012617 Pongo pygmaeus ENSPPYG00000012617 I 0.887
Q2VB18_CHICK Gallus gallus ENSGALG00000016481 I 0.884
ENSOANG00000003230 Ornithorhynchus anatinus ENSOANG00000003230 I 0.884
PUM2 Taeniopygia guttata ENSTGUG00000013149 I 0.884
PUM2 Anolis carolinensis ENSACAG00000010491 I 0.883
PUM2 Cavia porcellus ENSCPOG00000007075 I 0.880
PUM2 Tarsius syrichta ENSTSYG00000014463 I 0.879
PUM2 Takifugu rubripes ENSTRUG00000018167 I 0.875
PUM2 Gasterosteus aculeatus ENSGACG00000009670 I 0.871
PUM2 Tursiops truncatus ENSTTRG00000004887 I 0.868
PUM2 Monodelphis domestica ENSMODG00000009811 I 0.868
pum2 Xenopus tropicalis ENSXETG00000008903 I 0.861
PUM2 Oryzias latipes ENSORLG00000012611 I 0.861
estExt_Genewise1Plus.C_sca_670070 Lottia gigantea estExt_Genewise1Plus.C_sca_670070 I 0.801
e_gw.54.41.1 Nematostella vectensis e_gw.54.41.1 I 0.798
XP_794621.2 Strongylocentrotus purpuratus XP_794621.2 I 0.796
XP_001187223.1 Strongylocentrotus purpuratus XP_001187223.1 I 0.796
estExt_Genewise1Plus.C_4390035 Capitella teleta estExt_Genewise1Plus.C_4390035 I 0.791
nasonia_NCBI_hmm823294 Nasonia vitripennis nasonia_NCBI_hmm823294 I 0.784
PASA_GEN_0800110 Daphnia pulex PASA_GEN_0800110 I 0.779
AGAP003914 Anopheles gambiae AGAP003914 I 0.776
PHUM490070 Pediculus humanus PHUM490070 I 0.776
amel4_ncbi_hmm4895 Apis mellifera amel4_ncbi_hmm4895 I 0.774
pum Drosophila melanogaster FBgn0003165 D 0.770
GM26283 Drosophila sechellia FBgn0181138 I 0.770
CPIJ016844 Culex quinquefasciatus CPIJ016844 I 0.770
AAEL012420 Aedes aegypti AAEL012420 I 0.770
CpipJ_CPIJ016844 Culex pipiens CpipJ_CPIJ016844 I 0.770
DGIL_AUG5s1082g1t1 Acyrtosiphon pisum DGIL_AUG5s1082g1t1 I 0.770
GF18428 Drosophila ananassae FBgn0095446 I 0.766
GG17394 Drosophila erecta FBgn0109620 I 0.766
GK14049 Drosophila willistoni FBgn0216055 I 0.766
GE24797 Drosophila yakuba FBgn0241899 I 0.766
GH15257 Drosophila grimshawi FBgn0122732 I 0.763
GI22503 Drosophila mojavensis FBgn0145231 I 0.763
GA27465-RA Drosophila pseudoobscura FBgn0248832 I 0.763
BGIBMGA003401 Bombyx mori BGIBMGA003401 I 0.763
e_gw1.9.429.1 Trichoplax adhaerens e_gw1.9.429.1 I 0.759
GJ10105 Drosophila virilis FBgn0197393 I 0.759
GL22345 Drosophila persimilis FBgn0159937 I 0.752
ENSCING00000003888 Ciona intestinalis ENSCING00000003888 I 0.732