e_gw1.9.429.1 (Trichoplax adhaerens)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 e_gw1.9.429.1 T24756_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.795
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.795
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.795
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.795
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.795
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.774
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.774
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.774
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.774
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.774
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.774
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.774
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.763
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.763
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.9.429.1 PUF 142 176
e_gw1.9.429.1 PUF 178 212
e_gw1.9.429.1 PUF 214 248
e_gw1.9.429.1 PUF 250 284
e_gw1.9.429.1 PUF 286 320
e_gw1.9.429.1 PUF 322 356
e_gw1.9.429.1 PUF 358 392
e_gw1.9.429.1 PUF 406 438

Links

Other PUF family RBPs
Other Trichoplax adhaerens RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AGAP003914 Anopheles gambiae AGAP003914 I 0.802
AAEL012420 Aedes aegypti AAEL012420 I 0.799
CPIJ016844 Culex quinquefasciatus CPIJ016844 I 0.799
CpipJ_CPIJ016844 Culex pipiens CpipJ_CPIJ016844 I 0.799
PUM2 Equus caballus ENSECAG00000021930 I 0.799
PUM2 Bos taurus ENSBTAG00000011155 I 0.799
PUM2 Homo sapiens ENSG00000055917 D 0.799
Q2VB18_CHICK Gallus gallus ENSGALG00000016481 I 0.799
Pum2 Mus musculus ENSMUSG00000020594 D 0.799
ENSOANG00000003230 Ornithorhynchus anatinus ENSOANG00000003230 I 0.799
PUM2 Sus scrofa ENSSSCG00000008600 I 0.799
PUM2 Taeniopygia guttata ENSTGUG00000013149 I 0.799
PUM2 Oryctolagus cuniculus ENSOCUG00000017908 I 0.799
Pum2 Rattus norvegicus ENSRNOG00000006180 I 0.799
PUM2 Callithrix jacchus ENSCJAG00000007450 I 0.799
ENSPPYG00000012617 Pongo pygmaeus ENSPPYG00000012617 I 0.799
PUM2 Canis familiaris ENSCAFG00000003839 I 0.795
PUM2 Loxodonta africana ENSLAFG00000009278 I 0.795
PUM2 Vicugna pacos ENSVPAG00000005056 I 0.795
PUM2 Pan troglodytes ENSPTRG00000011692 I 0.795
PUM2 Gorilla gorilla ENSGGOG00000011374 I 0.795
PUM2 Cavia porcellus ENSCPOG00000007075 I 0.795
PUM2 Meleagris gallopavo ENSMGAG00000014040 I 0.795
Ame_R002800 Ailuropoda melanoleuca Ame_R002800 I 0.795
estExt_Genewise1Plus.C_4390035 Capitella teleta estExt_Genewise1Plus.C_4390035 I 0.795
PUM2 Tupaia belangeri ENSTBEG00000008729 I 0.791
PUM2 Anolis carolinensis ENSACAG00000010491 I 0.791
PUM2 Monodelphis domestica ENSMODG00000009811 I 0.788
PUM2 Takifugu rubripes ENSTRUG00000018167 I 0.788
estExt_Genewise1Plus.C_sca_670070 Lottia gigantea estExt_Genewise1Plus.C_sca_670070 I 0.784
PUM2 Gasterosteus aculeatus ENSGACG00000009670 I 0.784
PUM2 Oryzias latipes ENSORLG00000012611 I 0.784
pum2 Xenopus tropicalis ENSXETG00000008903 I 0.784
PUM1 Monodelphis domestica ENSMODG00000017067 I 0.777
PUM2 Tarsius syrichta ENSTSYG00000014463 I 0.777
PUM1 Anolis carolinensis ENSACAG00000000682 I 0.777
XP_794621.2 Strongylocentrotus purpuratus XP_794621.2 I 0.775
XP_001187223.1 Strongylocentrotus purpuratus XP_001187223.1 I 0.775
GE24797 Drosophila yakuba FBgn0241899 I 0.774
GA27465-RA Drosophila pseudoobscura FBgn0248832 I 0.774
GF18428 Drosophila ananassae FBgn0095446 I 0.774
GK14049 Drosophila willistoni FBgn0216055 I 0.774
GM26283 Drosophila sechellia FBgn0181138 I 0.774
pum Drosophila melanogaster FBgn0003165 D 0.774
GG17394 Drosophila erecta FBgn0109620 I 0.774
AAH80379 Xenopus laevis AAH80379 I 0.773
PUM1_CHICK Gallus gallus ENSGALG00000000597 I 0.773
nasonia_NCBI_hmm823294 Nasonia vitripennis nasonia_NCBI_hmm823294 I 0.773
PUM1 Meleagris gallopavo ENSMGAG00000000724 I 0.773
BAC57980 Xenopus laevis BAC57980 I 0.773
BAB20864 Xenopus laevis BAB20864 I 0.773
BGIBMGA003401 Bombyx mori BGIBMGA003401 I 0.771
GI22503 Drosophila mojavensis FBgn0145231 I 0.771
AAL14121 Xenopus laevis AAL14121 I 0.770
PUM1 Microcebus murinus ENSMICG00000007713 I 0.770
PASA_GEN_0800110 Daphnia pulex PASA_GEN_0800110 I 0.770
GL22345 Drosophila persimilis FBgn0159937 I 0.767
GJ10105 Drosophila virilis FBgn0197393 I 0.767
PUM2 Tursiops truncatus ENSTTRG00000004887 I 0.766
PUM1 Oryctolagus cuniculus ENSOCUG00000008641 I 0.766
PUM1 Oryzias latipes ENSORLG00000011482 I 0.766
e_gw.54.41.1 Nematostella vectensis e_gw.54.41.1 I 0.763
amel4_ncbi_hmm4895 Apis mellifera amel4_ncbi_hmm4895 I 0.763
GH15257 Drosophila grimshawi FBgn0122732 I 0.763
ENSPPYG00000001621 Pongo pygmaeus ENSPPYG00000001621 I 0.763
PUM1 Bos taurus ENSBTAG00000018979 I 0.763
Q3YAQ1_MACMU Macaca mulatta ENSMMUG00000013520 I 0.763
PUM1 Homo sapiens ENSG00000134644 D 0.763
Pum1 Rattus norvegicus ENSRNOG00000011709 I 0.763
Pum1 Mus musculus ENSMUSG00000028580 I 0.763
DGIL_AUG5s1082g1t1 Acyrtosiphon pisum DGIL_AUG5s1082g1t1 I 0.760
PUM1 Erinaceus europaeus ENSEEUG00000003871 I 0.759
PUM1 Sorex araneus ENSSARG00000003055 I 0.759
PUM1 Equus caballus ENSECAG00000021369 I 0.759
PUM1 Canis familiaris ENSCAFG00000011205 I 0.759
LOC100415491 Callithrix jacchus ENSCJAG00000006035 I 0.759
PUM1 Gasterosteus aculeatus ENSGACG00000005717 I 0.759
PUM1 Loxodonta africana ENSLAFG00000003178 I 0.759
Ame_R012380 Ailuropoda melanoleuca Ame_R012380 I 0.759
PUM1 Pan troglodytes ENSPTRG00000000453 I 0.759
PUM1 Takifugu rubripes ENSTRUG00000013121 I 0.759
PUM1 Vicugna pacos ENSVPAG00000005902 I 0.759
PUM1 Sus scrofa ENSSSCG00000003591 I 0.759
PHUM490070 Pediculus humanus PHUM490070 I 0.756
PUM1 Tursiops truncatus ENSTTRG00000007436 I 0.748
PUM1 Pteropus vampyrus ENSPVAG00000005207 I 0.748
PUM1 Tetraodon nigroviridis ENSTNIG00000016983 I 0.745
ENSCING00000003888 Ciona intestinalis ENSCING00000003888 I 0.745