PUM1 (Loxodonta africana)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ENSLAFG00000003178 T24210_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.982
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.982
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.897
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.897
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.897
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.897
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.897
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.777
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.777
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.777
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.777
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.777
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.777
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.777
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000002639 PUF 847 881
ENSLAFP00000002639 PUF 883 915
ENSLAFP00000002639 PUF 919 950
ENSLAFP00000002639 PUF 957 991
ENSLAFP00000002639 PUF 993 1027
ENSLAFP00000002639 PUF 1029 1063
ENSLAFP00000002639 PUF 1065 1095
ENSLAFP00000002639 PUF 1111 1142

Links

Other PUF family RBPs
Other Loxodonta africana RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PUM1 Vicugna pacos ENSVPAG00000005902 I 0.996
PUM1 Erinaceus europaeus ENSEEUG00000003871 I 0.996
Ame_R012380 Ailuropoda melanoleuca Ame_R012380 I 0.996
PUM1 Canis familiaris ENSCAFG00000011205 I 0.996
PUM1 Pan troglodytes ENSPTRG00000000453 I 0.993
PUM1 Sorex araneus ENSSARG00000003055 I 0.993
LOC100415491 Callithrix jacchus ENSCJAG00000006035 I 0.993
Q3YAQ1_MACMU Macaca mulatta ENSMMUG00000013520 I 0.993
PUM1 Homo sapiens ENSG00000134644 D 0.993
PUM1 Sus scrofa ENSSSCG00000003591 I 0.989
PUM1 Oryctolagus cuniculus ENSOCUG00000008641 I 0.989
PUM1 Bos taurus ENSBTAG00000018979 I 0.985
PUM1 Equus caballus ENSECAG00000021369 I 0.985
Pum1 Rattus norvegicus ENSRNOG00000011709 I 0.985
PUM1 Tursiops truncatus ENSTTRG00000007436 I 0.985
PUM1 Pteropus vampyrus ENSPVAG00000005207 I 0.985
Pum1 Mus musculus ENSMUSG00000028580 I 0.985
ENSPPYG00000001621 Pongo pygmaeus ENSPPYG00000001621 I 0.982
PUM1 Meleagris gallopavo ENSMGAG00000000724 I 0.974
PUM1 Monodelphis domestica ENSMODG00000017067 I 0.974
PUM1 Microcebus murinus ENSMICG00000007713 I 0.974
PUM1_CHICK Gallus gallus ENSGALG00000000597 I 0.974
BAC57980 Xenopus laevis BAC57980 I 0.971
AAH80379 Xenopus laevis AAH80379 I 0.971
AAL14121 Xenopus laevis AAL14121 I 0.967
PUM1 Anolis carolinensis ENSACAG00000000682 I 0.964
BAB20864 Xenopus laevis BAB20864 I 0.945
PUM1 Takifugu rubripes ENSTRUG00000013121 I 0.937
PUM1 Gasterosteus aculeatus ENSGACG00000005717 I 0.937
PUM1 Oryzias latipes ENSORLG00000011482 I 0.930
PUM1 Tetraodon nigroviridis ENSTNIG00000016983 I 0.919
PUM2 Meleagris gallopavo ENSMGAG00000014040 I 0.904
Ame_R002800 Ailuropoda melanoleuca Ame_R002800 I 0.897
PUM2 Callithrix jacchus ENSCJAG00000007450 I 0.897
PUM2 Homo sapiens ENSG00000055917 D 0.897
PUM2 Loxodonta africana ENSLAFG00000009278 I 0.897
PUM2 Canis familiaris ENSCAFG00000003839 I 0.897
PUM2 Gorilla gorilla ENSGGOG00000011374 I 0.897
Pum2 Mus musculus ENSMUSG00000020594 D 0.897
PUM2 Oryctolagus cuniculus ENSOCUG00000017908 I 0.897
PUM2 Pan troglodytes ENSPTRG00000011692 I 0.897
PUM2 Vicugna pacos ENSVPAG00000005056 I 0.897
PUM2 Anolis carolinensis ENSACAG00000010491 I 0.897
ENSOANG00000003230 Ornithorhynchus anatinus ENSOANG00000003230 I 0.895
PUM2 Sus scrofa ENSSSCG00000008600 I 0.895
PUM2 Taeniopygia guttata ENSTGUG00000013149 I 0.895
Q2VB18_CHICK Gallus gallus ENSGALG00000016481 I 0.895
ENSPPYG00000012617 Pongo pygmaeus ENSPPYG00000012617 I 0.895
PUM2 Bos taurus ENSBTAG00000011155 I 0.895
PUM2 Equus caballus ENSECAG00000021930 I 0.895
PUM2 Tupaia belangeri ENSTBEG00000008729 I 0.894
Pum2 Rattus norvegicus ENSRNOG00000006180 I 0.894
PUM2 Cavia porcellus ENSCPOG00000007075 I 0.887
pum2 Xenopus tropicalis ENSXETG00000008903 I 0.875
PUM2 Tarsius syrichta ENSTSYG00000014463 I 0.875
PUM2 Monodelphis domestica ENSMODG00000009811 I 0.875
PUM2 Takifugu rubripes ENSTRUG00000018167 I 0.871
PUM2 Tursiops truncatus ENSTTRG00000004887 I 0.871
PUM2 Gasterosteus aculeatus ENSGACG00000009670 I 0.868
PUM2 Oryzias latipes ENSORLG00000012611 I 0.868
XP_001187223.1 Strongylocentrotus purpuratus XP_001187223.1 I 0.810
XP_794621.2 Strongylocentrotus purpuratus XP_794621.2 I 0.810
e_gw.54.41.1 Nematostella vectensis e_gw.54.41.1 I 0.809
estExt_Genewise1Plus.C_4390035 Capitella teleta estExt_Genewise1Plus.C_4390035 I 0.791
PASA_GEN_0800110 Daphnia pulex PASA_GEN_0800110 I 0.789
estExt_Genewise1Plus.C_sca_670070 Lottia gigantea estExt_Genewise1Plus.C_sca_670070 I 0.785
nasonia_NCBI_hmm823294 Nasonia vitripennis nasonia_NCBI_hmm823294 I 0.785
PHUM490070 Pediculus humanus PHUM490070 I 0.783
GM26283 Drosophila sechellia FBgn0181138 I 0.777
CpipJ_CPIJ016844 Culex pipiens CpipJ_CPIJ016844 I 0.777
pum Drosophila melanogaster FBgn0003165 D 0.777
CPIJ016844 Culex quinquefasciatus CPIJ016844 I 0.777
amel4_ncbi_hmm4895 Apis mellifera amel4_ncbi_hmm4895 I 0.775
GK14049 Drosophila willistoni FBgn0216055 I 0.773
GG17394 Drosophila erecta FBgn0109620 I 0.773
GE24797 Drosophila yakuba FBgn0241899 I 0.773
GF18428 Drosophila ananassae FBgn0095446 I 0.773
AAEL012420 Aedes aegypti AAEL012420 I 0.773
AGAP003914 Anopheles gambiae AGAP003914 I 0.773
GI22503 Drosophila mojavensis FBgn0145231 I 0.770
GH15257 Drosophila grimshawi FBgn0122732 I 0.770
GA27465-RA Drosophila pseudoobscura FBgn0248832 I 0.770
GJ10105 Drosophila virilis FBgn0197393 I 0.766
DGIL_AUG5s1082g1t1 Acyrtosiphon pisum DGIL_AUG5s1082g1t1 I 0.763
GL22345 Drosophila persimilis FBgn0159937 I 0.763
BGIBMGA003401 Bombyx mori BGIBMGA003401 I 0.763
ENSCING00000003888 Ciona intestinalis ENSCING00000003888 I 0.760
e_gw1.9.429.1 Trichoplax adhaerens e_gw1.9.429.1 I 0.759