BAC57980 (Xenopus laevis)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 BAC57980 T25292_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.956
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.956
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.912
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.912
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.912
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.912
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.912
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.788
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.788
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.788
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.788
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.788
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.788
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.788
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
BAC57980 PUF 845 879
BAC57980 PUF 881 913
BAC57980 PUF 917 948
BAC57980 PUF 955 989
BAC57980 PUF 991 1025
BAC57980 PUF 1027 1061
BAC57980 PUF 1063 1097
BAC57980 PUF 1109 1140

Links

Other PUF family RBPs
Other Xenopus laevis RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH80379 Xenopus laevis AAH80379 I 1.000
PUM1_CHICK Gallus gallus ENSGALG00000000597 I 0.996
PUM1 Monodelphis domestica ENSMODG00000017067 I 0.996
PUM1 Meleagris gallopavo ENSMGAG00000000724 I 0.996
AAL14121 Xenopus laevis AAL14121 I 0.996
PUM1 Anolis carolinensis ENSACAG00000000682 I 0.985
PUM1 Microcebus murinus ENSMICG00000007713 I 0.985
BAB20864 Xenopus laevis BAB20864 I 0.974
PUM1 Erinaceus europaeus ENSEEUG00000003871 I 0.974
PUM1 Canis familiaris ENSCAFG00000011205 I 0.971
PUM1 Vicugna pacos ENSVPAG00000005902 I 0.971
Ame_R012380 Ailuropoda melanoleuca Ame_R012380 I 0.971
PUM1 Loxodonta africana ENSLAFG00000003178 I 0.971
Q3YAQ1_MACMU Macaca mulatta ENSMMUG00000013520 I 0.967
PUM1 Pan troglodytes ENSPTRG00000000453 I 0.967
PUM1 Homo sapiens ENSG00000134644 D 0.967
PUM1 Sorex araneus ENSSARG00000003055 I 0.967
LOC100415491 Callithrix jacchus ENSCJAG00000006035 I 0.967
PUM1 Sus scrofa ENSSSCG00000003591 I 0.963
PUM1 Bos taurus ENSBTAG00000018979 I 0.960
PUM1 Oryctolagus cuniculus ENSOCUG00000008641 I 0.960
Pum1 Rattus norvegicus ENSRNOG00000011709 I 0.960
PUM1 Tursiops truncatus ENSTTRG00000007436 I 0.960
PUM1 Pteropus vampyrus ENSPVAG00000005207 I 0.960
Pum1 Mus musculus ENSMUSG00000028580 I 0.960
ENSPPYG00000001621 Pongo pygmaeus ENSPPYG00000001621 I 0.956
PUM1 Equus caballus ENSECAG00000021369 I 0.956
PUM1 Oryzias latipes ENSORLG00000011482 I 0.949
PUM1 Takifugu rubripes ENSTRUG00000013121 I 0.930
PUM1 Gasterosteus aculeatus ENSGACG00000005717 I 0.930
PUM2 Meleagris gallopavo ENSMGAG00000014040 I 0.923
PUM1 Tetraodon nigroviridis ENSTNIG00000016983 I 0.916
PUM2 Anolis carolinensis ENSACAG00000010491 I 0.915
ENSOANG00000003230 Ornithorhynchus anatinus ENSOANG00000003230 I 0.913
PUM2 Taeniopygia guttata ENSTGUG00000013149 I 0.913
Q2VB18_CHICK Gallus gallus ENSGALG00000016481 I 0.913
PUM2 Canis familiaris ENSCAFG00000003839 I 0.912
PUM2 Vicugna pacos ENSVPAG00000005056 I 0.912
PUM2 Pan troglodytes ENSPTRG00000011692 I 0.912
Ame_R002800 Ailuropoda melanoleuca Ame_R002800 I 0.912
PUM2 Callithrix jacchus ENSCJAG00000007450 I 0.912
PUM2 Homo sapiens ENSG00000055917 D 0.912
PUM2 Loxodonta africana ENSLAFG00000009278 I 0.912
PUM2 Gorilla gorilla ENSGGOG00000011374 I 0.912
PUM2 Oryctolagus cuniculus ENSOCUG00000017908 I 0.912
Pum2 Mus musculus ENSMUSG00000020594 D 0.912
PUM2 Sus scrofa ENSSSCG00000008600 I 0.909
ENSPPYG00000012617 Pongo pygmaeus ENSPPYG00000012617 I 0.909
PUM2 Equus caballus ENSECAG00000021930 I 0.909
PUM2 Bos taurus ENSBTAG00000011155 I 0.909
Pum2 Rattus norvegicus ENSRNOG00000006180 I 0.908
PUM2 Tupaia belangeri ENSTBEG00000008729 I 0.908
PUM2 Cavia porcellus ENSCPOG00000007075 I 0.902
PUM2 Tarsius syrichta ENSTSYG00000014463 I 0.894
PUM2 Monodelphis domestica ENSMODG00000009811 I 0.893
pum2 Xenopus tropicalis ENSXETG00000008903 I 0.883
PUM2 Takifugu rubripes ENSTRUG00000018167 I 0.879
PUM2 Tursiops truncatus ENSTTRG00000004887 I 0.879
PUM2 Gasterosteus aculeatus ENSGACG00000009670 I 0.875
PUM2 Oryzias latipes ENSORLG00000012611 I 0.875
XP_001187223.1 Strongylocentrotus purpuratus XP_001187223.1 I 0.824
XP_794621.2 Strongylocentrotus purpuratus XP_794621.2 I 0.824
e_gw.54.41.1 Nematostella vectensis e_gw.54.41.1 I 0.823
estExt_Genewise1Plus.C_4390035 Capitella teleta estExt_Genewise1Plus.C_4390035 I 0.809
estExt_Genewise1Plus.C_sca_670070 Lottia gigantea estExt_Genewise1Plus.C_sca_670070 I 0.800
PASA_GEN_0800110 Daphnia pulex PASA_GEN_0800110 I 0.797
AAEL012420 Aedes aegypti AAEL012420 I 0.788
GM26283 Drosophila sechellia FBgn0181138 I 0.788
pum Drosophila melanogaster FBgn0003165 D 0.788
CPIJ016844 Culex quinquefasciatus CPIJ016844 I 0.788
CpipJ_CPIJ016844 Culex pipiens CpipJ_CPIJ016844 I 0.788
AGAP003914 Anopheles gambiae AGAP003914 I 0.787
GF18428 Drosophila ananassae FBgn0095446 I 0.784
GG17394 Drosophila erecta FBgn0109620 I 0.784
GE24797 Drosophila yakuba FBgn0241899 I 0.784
GK14049 Drosophila willistoni FBgn0216055 I 0.784
nasonia_NCBI_hmm823294 Nasonia vitripennis nasonia_NCBI_hmm823294 I 0.783
GI22503 Drosophila mojavensis FBgn0145231 I 0.781
GH15257 Drosophila grimshawi FBgn0122732 I 0.781
PHUM490070 Pediculus humanus PHUM490070 I 0.781
GA27465-RA Drosophila pseudoobscura FBgn0248832 I 0.781
GJ10105 Drosophila virilis FBgn0197393 I 0.777
BGIBMGA003401 Bombyx mori BGIBMGA003401 I 0.777
GL22345 Drosophila persimilis FBgn0159937 I 0.773
e_gw1.9.429.1 Trichoplax adhaerens e_gw1.9.429.1 I 0.773
DGIL_AUG5s1082g1t1 Acyrtosiphon pisum DGIL_AUG5s1082g1t1 I 0.770
amel4_ncbi_hmm4895 Apis mellifera amel4_ncbi_hmm4895 I 0.770
ENSCING00000003888 Ciona intestinalis ENSCING00000003888 I 0.745