e_gw.54.41.1 (Nematostella vectensis)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 e_gw.54.41.1 T24761_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.812
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.812
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.812
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.812
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.812
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.809
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.809
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.788
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.788
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.788
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.788
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.788
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.788
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.788
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw.54.41.1 PUF 21 55
e_gw.54.41.1 PUF 57 90
e_gw.54.41.1 PUF 94 127
e_gw.54.41.1 PUF 129 163
e_gw.54.41.1 PUF 165 199
e_gw.54.41.1 PUF 201 235
e_gw.54.41.1 PUF 237 271
e_gw.54.41.1 PUF 281 314

Links

Other PUF family RBPs
Other Nematostella vectensis RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PUM1 Monodelphis domestica ENSMODG00000017067 I 0.830
PUM1 Anolis carolinensis ENSACAG00000000682 I 0.830
PUM1 Meleagris gallopavo ENSMGAG00000000724 I 0.827
PUM1_CHICK Gallus gallus ENSGALG00000000597 I 0.827
BAB20864 Xenopus laevis BAB20864 I 0.823
Q2VB18_CHICK Gallus gallus ENSGALG00000016481 I 0.823
AAH80379 Xenopus laevis AAH80379 I 0.823
BAC57980 Xenopus laevis BAC57980 I 0.823
ENSOANG00000003230 Ornithorhynchus anatinus ENSOANG00000003230 I 0.823
PUM2 Taeniopygia guttata ENSTGUG00000013149 I 0.823
PUM2 Homo sapiens ENSG00000055917 D 0.819
PUM2 Sus scrofa ENSSSCG00000008600 I 0.819
PUM2 Equus caballus ENSECAG00000021930 I 0.819
PUM2 Bos taurus ENSBTAG00000011155 I 0.819
ENSPPYG00000012617 Pongo pygmaeus ENSPPYG00000012617 I 0.819
PUM1 Oryzias latipes ENSORLG00000011482 I 0.819
PUM2 Callithrix jacchus ENSCJAG00000007450 I 0.819
AAL14121 Xenopus laevis AAL14121 I 0.819
Pum2 Mus musculus ENSMUSG00000020594 D 0.819
PUM2 Oryctolagus cuniculus ENSOCUG00000017908 I 0.819
PUM2 Monodelphis domestica ENSMODG00000009811 I 0.819
PUM2 Meleagris gallopavo ENSMGAG00000014040 I 0.819
PUM2 Cavia porcellus ENSCPOG00000007075 I 0.816
PUM1 Microcebus murinus ENSMICG00000007713 I 0.816
PUM2 Anolis carolinensis ENSACAG00000010491 I 0.816
XP_794621.2 Strongylocentrotus purpuratus XP_794621.2 I 0.814
XP_001187223.1 Strongylocentrotus purpuratus XP_001187223.1 I 0.814
estExt_Genewise1Plus.C_sca_670070 Lottia gigantea estExt_Genewise1Plus.C_sca_670070 I 0.813
Ame_R002800 Ailuropoda melanoleuca Ame_R002800 I 0.812
Pum2 Rattus norvegicus ENSRNOG00000006180 I 0.812
PUM2 Gorilla gorilla ENSGGOG00000011374 I 0.812
PUM2 Pan troglodytes ENSPTRG00000011692 I 0.812
PUM1 Bos taurus ENSBTAG00000018979 I 0.812
PUM2 Vicugna pacos ENSVPAG00000005056 I 0.812
PUM1 Equus caballus ENSECAG00000021369 I 0.812
PUM2 Canis familiaris ENSCAFG00000003839 I 0.812
PUM1 Erinaceus europaeus ENSEEUG00000003871 I 0.812
Ame_R012380 Ailuropoda melanoleuca Ame_R012380 I 0.809
ENSPPYG00000001621 Pongo pygmaeus ENSPPYG00000001621 I 0.809
Q3YAQ1_MACMU Macaca mulatta ENSMMUG00000013520 I 0.809
PUM1 Canis familiaris ENSCAFG00000011205 I 0.809
Pum1 Mus musculus ENSMUSG00000028580 I 0.809
Pum1 Rattus norvegicus ENSRNOG00000011709 I 0.809
PUM1 Homo sapiens ENSG00000134644 D 0.809
PUM1 Vicugna pacos ENSVPAG00000005902 I 0.809
PUM2 Tupaia belangeri ENSTBEG00000008729 I 0.809
PUM1 Sorex araneus ENSSARG00000003055 I 0.809
PUM1 Loxodonta africana ENSLAFG00000003178 I 0.809
PUM1 Oryctolagus cuniculus ENSOCUG00000008641 I 0.809
PUM2 Loxodonta africana ENSLAFG00000009278 I 0.809
BGIBMGA003401 Bombyx mori BGIBMGA003401 I 0.806
PUM1 Pan troglodytes ENSPTRG00000000453 I 0.805
PUM1 Sus scrofa ENSSSCG00000003591 I 0.805
pum2 Xenopus tropicalis ENSXETG00000008903 I 0.805
LOC100415491 Callithrix jacchus ENSCJAG00000006035 I 0.805
estExt_Genewise1Plus.C_4390035 Capitella teleta estExt_Genewise1Plus.C_4390035 I 0.803
PUM1 Pteropus vampyrus ENSPVAG00000005207 I 0.801
PUM1 Takifugu rubripes ENSTRUG00000013121 I 0.798
PUM1 Tursiops truncatus ENSTTRG00000007436 I 0.798
PUM1 Gasterosteus aculeatus ENSGACG00000005717 I 0.798
CPIJ016844 Culex quinquefasciatus CPIJ016844 I 0.795
PUM2 Oryzias latipes ENSORLG00000012611 I 0.795
CpipJ_CPIJ016844 Culex pipiens CpipJ_CPIJ016844 I 0.795
PUM2 Takifugu rubripes ENSTRUG00000018167 I 0.794
PUM2 Tarsius syrichta ENSTSYG00000014463 I 0.794
PUM2 Gasterosteus aculeatus ENSGACG00000009670 I 0.794
AGAP003914 Anopheles gambiae AGAP003914 I 0.791
amel4_ncbi_hmm4895 Apis mellifera amel4_ncbi_hmm4895 I 0.788
DGIL_AUG5s1082g1t1 Acyrtosiphon pisum DGIL_AUG5s1082g1t1 I 0.788
pum Drosophila melanogaster FBgn0003165 D 0.788
AAEL012420 Aedes aegypti AAEL012420 I 0.788
GM26283 Drosophila sechellia FBgn0181138 I 0.788
PASA_GEN_0800110 Daphnia pulex PASA_GEN_0800110 I 0.788
GE24797 Drosophila yakuba FBgn0241899 I 0.784
GA27465-RA Drosophila pseudoobscura FBgn0248832 I 0.784
GG17394 Drosophila erecta FBgn0109620 I 0.784
GK14049 Drosophila willistoni FBgn0216055 I 0.784
GF18428 Drosophila ananassae FBgn0095446 I 0.784
PUM2 Tursiops truncatus ENSTTRG00000004887 I 0.783
PUM1 Tetraodon nigroviridis ENSTNIG00000016983 I 0.783
PHUM490070 Pediculus humanus PHUM490070 I 0.781
nasonia_NCBI_hmm823294 Nasonia vitripennis nasonia_NCBI_hmm823294 I 0.781
GJ10105 Drosophila virilis FBgn0197393 I 0.781
GI22503 Drosophila mojavensis FBgn0145231 I 0.781
GH15257 Drosophila grimshawi FBgn0122732 I 0.781
GL22345 Drosophila persimilis FBgn0159937 I 0.773
e_gw1.9.429.1 Trichoplax adhaerens e_gw1.9.429.1 I 0.763
ENSCING00000003888 Ciona intestinalis ENSCING00000003888 I 0.733