PUM1 (Tetraodon nigroviridis)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ENSTNIG00000016983 T24283_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.915
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.915
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.883
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.883
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.883
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.883
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.883
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.755
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.755
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.755
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.755
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.755
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.755
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.755
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000020106 PUF 833 867
ENSTNIP00000020106 PUF 869 901
ENSTNIP00000020106 PUF 905 937
ENSTNIP00000020106 PUF 943 977
ENSTNIP00000020106 PUF 984 1014
ENSTNIP00000020106 PUF 1016 1050
ENSTNIP00000020106 PUF 1052 1082
ENSTNIP00000020106 PUF 1098 1129

Links

Other PUF family RBPs
Other Tetraodon nigroviridis RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PUM1 Takifugu rubripes ENSTRUG00000013121 I 0.981
PUM1 Gasterosteus aculeatus ENSGACG00000005717 I 0.978
PUM1 Oryzias latipes ENSORLG00000011482 I 0.960
PUM1 Sus scrofa ENSSSCG00000003591 I 0.930
LOC100415491 Callithrix jacchus ENSCJAG00000006035 I 0.930
PUM1 Pan troglodytes ENSPTRG00000000453 I 0.930
PUM1 Homo sapiens ENSG00000134644 D 0.930
Q3YAQ1_MACMU Macaca mulatta ENSMMUG00000013520 I 0.930
Ame_R012380 Ailuropoda melanoleuca Ame_R012380 I 0.922
PUM1 Sorex araneus ENSSARG00000003055 I 0.922
PUM1 Canis familiaris ENSCAFG00000011205 I 0.922
PUM1 Vicugna pacos ENSVPAG00000005902 I 0.922
Pum1 Mus musculus ENSMUSG00000028580 I 0.919
PUM1 Erinaceus europaeus ENSEEUG00000003871 I 0.919
PUM1 Loxodonta africana ENSLAFG00000003178 I 0.919
Pum1 Rattus norvegicus ENSRNOG00000011709 I 0.919
PUM1 Meleagris gallopavo ENSMGAG00000000724 I 0.916
PUM1_CHICK Gallus gallus ENSGALG00000000597 I 0.916
PUM1 Monodelphis domestica ENSMODG00000017067 I 0.916
BAC57980 Xenopus laevis BAC57980 I 0.916
AAH80379 Xenopus laevis AAH80379 I 0.916
PUM1 Microcebus murinus ENSMICG00000007713 I 0.916
ENSPPYG00000001621 Pongo pygmaeus ENSPPYG00000001621 I 0.915
PUM1 Bos taurus ENSBTAG00000018979 I 0.915
PUM1 Tursiops truncatus ENSTTRG00000007436 I 0.915
PUM1 Oryctolagus cuniculus ENSOCUG00000008641 I 0.915
AAL14121 Xenopus laevis AAL14121 I 0.912
PUM1 Pteropus vampyrus ENSPVAG00000005207 I 0.911
PUM1 Anolis carolinensis ENSACAG00000000682 I 0.909
PUM1 Equus caballus ENSECAG00000021369 I 0.908
BAB20864 Xenopus laevis BAB20864 I 0.901
PUM2 Tarsius syrichta ENSTSYG00000014463 I 0.886
PUM2 Callithrix jacchus ENSCJAG00000007450 I 0.883
PUM2 Homo sapiens ENSG00000055917 D 0.883
PUM2 Canis familiaris ENSCAFG00000003839 I 0.883
PUM2 Vicugna pacos ENSVPAG00000005056 I 0.883
PUM2 Gorilla gorilla ENSGGOG00000011374 I 0.883
PUM2 Pan troglodytes ENSPTRG00000011692 I 0.883
PUM2 Oryctolagus cuniculus ENSOCUG00000017908 I 0.883
Ame_R002800 Ailuropoda melanoleuca Ame_R002800 I 0.883
Pum2 Mus musculus ENSMUSG00000020594 D 0.883
PUM2 Loxodonta africana ENSLAFG00000009278 I 0.879
PUM2 Tupaia belangeri ENSTBEG00000008729 I 0.879
Pum2 Rattus norvegicus ENSRNOG00000006180 I 0.875
PUM2 Meleagris gallopavo ENSMGAG00000014040 I 0.872
ENSPPYG00000012617 Pongo pygmaeus ENSPPYG00000012617 I 0.869
PUM2 Sus scrofa ENSSSCG00000008600 I 0.869
PUM2 Equus caballus ENSECAG00000021930 I 0.869
PUM2 Bos taurus ENSBTAG00000011155 I 0.869
ENSOANG00000003230 Ornithorhynchus anatinus ENSOANG00000003230 I 0.865
Q2VB18_CHICK Gallus gallus ENSGALG00000016481 I 0.865
PUM2 Taeniopygia guttata ENSTGUG00000013149 I 0.865
PUM2 Anolis carolinensis ENSACAG00000010491 I 0.864
PUM2 Cavia porcellus ENSCPOG00000007075 I 0.862
PUM2 Takifugu rubripes ENSTRUG00000018167 I 0.857
PUM2 Gasterosteus aculeatus ENSGACG00000009670 I 0.857
PUM2 Tursiops truncatus ENSTTRG00000004887 I 0.850
PUM2 Monodelphis domestica ENSMODG00000009811 I 0.850
PUM2 Oryzias latipes ENSORLG00000012611 I 0.846
pum2 Xenopus tropicalis ENSXETG00000008903 I 0.843
e_gw.54.41.1 Nematostella vectensis e_gw.54.41.1 I 0.783
estExt_Genewise1Plus.C_sca_670070 Lottia gigantea estExt_Genewise1Plus.C_sca_670070 I 0.783
XP_794621.2 Strongylocentrotus purpuratus XP_794621.2 I 0.781
XP_001187223.1 Strongylocentrotus purpuratus XP_001187223.1 I 0.781
estExt_Genewise1Plus.C_4390035 Capitella teleta estExt_Genewise1Plus.C_4390035 I 0.773
nasonia_NCBI_hmm823294 Nasonia vitripennis nasonia_NCBI_hmm823294 I 0.769
PHUM490070 Pediculus humanus PHUM490070 I 0.769
AGAP003914 Anopheles gambiae AGAP003914 I 0.769
CPIJ016844 Culex quinquefasciatus CPIJ016844 I 0.763
CpipJ_CPIJ016844 Culex pipiens CpipJ_CPIJ016844 I 0.763
AAEL012420 Aedes aegypti AAEL012420 I 0.763
PASA_GEN_0800110 Daphnia pulex PASA_GEN_0800110 I 0.761
amel4_ncbi_hmm4895 Apis mellifera amel4_ncbi_hmm4895 I 0.759
GM26283 Drosophila sechellia FBgn0181138 I 0.755
pum Drosophila melanogaster FBgn0003165 D 0.755
BGIBMGA003401 Bombyx mori BGIBMGA003401 I 0.755
GG17394 Drosophila erecta FBgn0109620 I 0.752
GF18428 Drosophila ananassae FBgn0095446 I 0.752
GK14049 Drosophila willistoni FBgn0216055 I 0.752
GE24797 Drosophila yakuba FBgn0241899 I 0.752
DGIL_AUG5s1082g1t1 Acyrtosiphon pisum DGIL_AUG5s1082g1t1 I 0.752
GA27465-RA Drosophila pseudoobscura FBgn0248832 I 0.748
GI22503 Drosophila mojavensis FBgn0145231 I 0.748
GH15257 Drosophila grimshawi FBgn0122732 I 0.748
e_gw1.9.429.1 Trichoplax adhaerens e_gw1.9.429.1 I 0.745
GJ10105 Drosophila virilis FBgn0197393 I 0.745
GL22345 Drosophila persimilis FBgn0159937 I 0.737
ENSCING00000003888 Ciona intestinalis ENSCING00000003888 I 0.717