ENSCING00000001633 (Ciona intestinalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCING00000001633 T35357_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.872
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.867
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.836
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000003274 RRM 83 150
ENSCINP00000003274 RRM 191 255
ENSCINP00000024148 RRM 17 85
ENSCINP00000024148 RRM 125 189

Links

Other RRM family RBPs
Other Ciona intestinalis RBPs

148 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
111676 Helobdella robusta 111676 I 0.790
69117 Helobdella robusta 69117 N 0.731
79994 Helobdella robusta 79994 I 0.754
AAEL012065 Aedes aegypti AAEL012065 I 0.752
ADH10187 Xenopus laevis ADH10187 I 0.823
AGAP002296 Anopheles gambiae AGAP002296 I 0.835
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.853
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.836
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.867
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.823
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.831
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.852
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.836
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.867
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.823
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.823
CPEB3 Bos taurus ENSBTAG00000015450 I 0.836
CPEB2 Bos taurus ENSBTAG00000019847 I 0.867
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.836
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.867
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.817
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.830
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.867
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.836
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.867
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.823
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.867
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.823
CPEB2 Danio rerio ENSDARG00000052604 I 0.757
cpeb3 Danio rerio ENSDARG00000060103 I 0.816
CPEB4 Danio rerio ENSDARG00000060495 I 0.816
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.867
CPEB3 Equus caballus ENSECAG00000000077 I 0.830
CPEB2 Equus caballus ENSECAG00000008722 I 0.867
LOC100058918 Equus caballus ENSECAG00000016921 I 0.823
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.823
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.836
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.725
CPEB3 Homo sapiens ENSG00000107864 I 0.836
CPEB4 Homo sapiens ENSG00000113742 D 0.823
CPEB2 Homo sapiens ENSG00000137449 D 0.867
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.816
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.838
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.816
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.816
CPEB3 Gallus gallus ENSGALG00000006912 I 0.836
CPEB4 Gallus gallus ENSGALG00000014074 I 0.811
CPEB2 Gallus gallus ENSGALG00000014516 I 0.867
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.867
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.823
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.836
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.867
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.823
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.836
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.867
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.836
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.811
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.867
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.836
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.836
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.823
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.867
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.836
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.816
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.867
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.823
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.836
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.823
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.836
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.867
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.867
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.811
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.830
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.867
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.823
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.836
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.823
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.867
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.823
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.814
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.816
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.816
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.846
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.823
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.743
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.836
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.867
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.823
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.836
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.867
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.823
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.822
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.822
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.823
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.823
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.836
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.823
CPEB3 Sorex araneus ENSSARG00000001994 I 0.830
CPEB2 Sorex araneus ENSSARG00000010559 I 0.778
CPEB4 Sorex araneus ENSSARG00000013389 I 0.809
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.867
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.836
CPEB4 Sus scrofa ENSSSCG00000016981 I 0.707
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.823
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.823
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.836
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.823
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.836
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.867
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.817
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.816
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.846
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.816
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.816
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.810
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.846
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.823
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.867
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.764
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.778
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.743
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.836
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.801
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.824
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.831
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.844
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.838
GF10140 Drosophila ananassae FBgn0087181 I 0.838
GG15051 Drosophila erecta FBgn0107305 I 0.838
GH16131 Drosophila grimshawi FBgn0123602 I 0.844
GI12400 Drosophila mojavensis FBgn0135157 I 0.838
GL20808 Drosophila persimilis FBgn0158403 I 0.838
GJ12289 Drosophila virilis FBgn0199538 I 0.838
GK17460 Drosophila willistoni FBgn0219459 I 0.838
GE21274 Drosophila yakuba FBgn0238542 I 0.838
orb2 Drosophila melanogaster FBgn0262573 D 0.838
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.882
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.827
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.876
ISCW010113 Ixodes scapularis ISCW010113 I 0.853
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.816
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.887
PHUM335520 Pediculus humanus PHUM335520 I 0.837
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.812
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.853
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.826
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.853