CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GSVIVG00027891001
(
Vitis vinifera
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GSVIVG00027891001
T44743_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSVIVT00027891001
RRM
8
76
LFIGGISWETSEDKLKEYFGSYGEVSQAVVMRDKATGRPRGFGFVVFADPSILDRVLQEKHIIDGRTVE
GSVIVT00027891001
RRM
112
181
IFVGGLPPTLSEEGFRQYFEAFGHVTDVVVMYDQSTQRPRGFGFVSFDTEDAVDRVLYKTFHDLNGKQVE
Links
Other
RRM
family RBPs
Other
Vitis vinifera
RBPs
48 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
27613.m000635
Ricinus communis
27613.m000635
N
0.705
30008.m000830
Ricinus communis
30008.m000830
N
0.835
AC198361.3_FG004
Zea mays
AC198361.3_FG004
N
0.770
AT4G14300
Arabidopsis thaliana
AT4G14300-TAIR-G
N
0.766
BRADI3G28430
Brachypodium distachyon
BRADI3G28430
N
0.741
cassava12598.valid.m1
Manihot esculenta
cassava12598.valid.m1
N
0.770
cassava12599.valid.m1
Manihot esculenta
cassava12599.valid.m1
N
0.770
cassava12600.valid.m1
Manihot esculenta
cassava12600.valid.m1
N
0.770
cassava12601.valid.m1
Manihot esculenta
cassava12601.valid.m1
N
0.770
cassava7388.valid.m1
Manihot esculenta
cassava7388.valid.m1
N
0.856
chr2.LjT48A12.190.nd
Lotus japonicus
chr2.LjT48A12.190.nd
N
0.705
chr2.LjT48A12.20.nd
Lotus japonicus
chr2.LjT48A12.20.nd
N
0.707
Cucsa.037090
Cucumis sativus
Cucsa.037090
N
0.770
Cucsa.383370
Cucumis sativus
Cucsa.383370
N
0.842
XM_002870277.1
Arabidopsis lyrata
fgenesh2_kg.7__2913__AT4G14300.1
N
0.766
Glyma02g46650.1
Glycine max
Glyma02g46650.1
N
0.727
Glyma08g43740.1
Glycine max
Glyma08g43740.1
N
0.719
Glyma10g33320.1
Glycine max
Glyma10g33320.1
N
0.806
Glyma14g02020.1
Glycine max
Glyma14g02020.1
N
0.719
Glyma18g09090.1
Glycine max
Glyma18g09090.1
N
0.727
Glyma20g34330.1
Glycine max
Glyma20g34330.1
N
0.799
GRMZM2G167505
Zea mays
GRMZM2G167505
N
0.784
GRMZM2G176918
Zea mays
GRMZM2G176918
N
0.770
GSVIVG00028394001
Vitis vinifera
GSVIVG00028394001
N
0.835
LOC_Os10g33230
Oryza sativa
LOC_Os10g33230
N
0.734
LOC_Os11g41890
Oryza sativa
LOC_Os11g41890
N
0.700
MDP0000130865
Malus x domestica
MDP0000130865
N
0.727
MDP0000173934
Malus x domestica
MDP0000173934
N
0.856
MDP0000188788
Malus x domestica
MDP0000188788
N
0.705
MDP0000204698
Malus x domestica
MDP0000204698
N
0.705
MDP0000217366
Malus x domestica
MDP0000217366
N
0.849
MDP0000286430
Malus x domestica
MDP0000286430
N
0.712
MDP0000320861
Malus x domestica
MDP0000320861
N
0.748
MDP0000609551
Malus x domestica
MDP0000609551
N
0.705
Medtr3g076980
Medicago truncatula
Medtr3g076980
N
0.719
mgf009385m
Mimulus guttatus
mgf009385m
N
0.712
PK00513.1
Cannabis sativa
PK00513.1
N
0.842
PK25912.1
Cannabis sativa
PK25912.1
N
0.719
B9GRF1_POPTR
Populus trichocarpa
POPTR_0002s26030
N
0.741
B9HCV4_POPTR
Populus trichocarpa
POPTR_0006s01680
N
0.705
B9HKT4_POPTR
Populus trichocarpa
POPTR_0008s17030
N
0.835
B9HSS5_POPTR
Populus trichocarpa
POPTR_0010s07790
N
0.835
B9IBE6_POPTR
Populus trichocarpa
POPTR_0014s18470
N
0.748
ppa004834m
Prunus persica
ppa004834m
N
0.705
ppa005122m
Prunus persica
ppa005122m
N
0.705
ppa005309m
Prunus persica
ppa005309m
N
0.871
ppa005979m
Prunus persica
ppa005979m
N
0.748
Sb01g019610
Sorghum bicolor
Sb01g019610
N
0.777