Ame_R009570 (Ailuropoda melanoleuca)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Ame_R009570 T55568_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.915
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.915
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.915
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.906
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.906
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.906
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.754
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.754
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.754
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.754
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.754
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.754
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.708
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Ame_R009570 RRM 38 108
Ame_R009570 RRM 124 192
Ame_R009570 RRM 288 358

Links

Other RRM family RBPs
Other Ailuropoda melanoleuca RBPs

191 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA96942 Xenopus laevis AAA96942 I 0.745
AAA96943 Xenopus laevis AAA96943 I 0.901
AAA96944 Xenopus laevis AAA96944 I 0.958
AAA96945 Xenopus laevis AAA96945 I 0.911
AAH86269 Xenopus laevis AAH86269 I 0.741
AAH94189 Xenopus laevis AAH94189 I 0.901
AAH99348 Xenopus laevis AAH99348 I 0.911
AAI16460 Xenopus laevis AAI16460 I 0.712
AAI69769 Xenopus laevis AAI69769 I 0.958
AAI70539 Xenopus laevis AAI70539 I 0.901
AGAP000965 Anopheles gambiae AGAP000965 I 0.741
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.759
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.897
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.906
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.750
CAA59430 Xenopus laevis CAA59430 I 0.897
CBF67567 Xenopus laevis CBF67567 I 0.911
CBU92440 Xenopus laevis CBU92440 I 0.911
CPIJ000395 Culex quinquefasciatus CPIJ000395 I 0.702
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 0.741
CpipJ_CPIJ000395 Culex pipiens CpipJ_CPIJ000395 I 0.702
CpipJ_CPIJ016143 Culex pipiens CpipJ_CPIJ016143 I 0.741
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.906
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.958
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.901
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.745
ELAVL3 Bos taurus ENSBTAG00000014412 I 1.000
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.906
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.897
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.906
ELAVL3 Canis familiaris ENSCAFG00000017350 I 1.000
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.750
ELAVL2 Choloepus hoffmanni ENSCHOG00000000635 I 0.764
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.906
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.897
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.906
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.906
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.897
ENSCPOG00000022816 Cavia porcellus ENSCPOG00000022816 I 0.726
elavl3 Danio rerio ENSDARG00000014420 I 0.967
hug Danio rerio ENSDARG00000016405 I 0.768
elavl1 Danio rerio ENSDARG00000038695 I 0.768
elavl2 Danio rerio ENSDARG00000040732 I 0.878
elavl4 Danio rerio ENSDARG00000045639 I 0.902
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.906
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.741
ELAVL2 Dasypus novemcinctus ENSDNOG00000016605 I 0.741
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.976
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.741
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.897
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.906
LOC100060819 Equus caballus ENSECAG00000019459 I 0.745
ELAVL2 Equus caballus ENSECAG00000020142 I 0.897
LOC100056901 Equus caballus ENSECAG00000020594 I 0.915
LOC100051268 Equus caballus ENSECAG00000022284 I 0.906
ELAVL2 Erinaceus europaeus ENSEEUG00000008733 I 0.741
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.906
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.897
ELAVL4 Echinops telfairi ENSETEG00000013779 I 0.769
ELAVL1 Felis catus ENSFCAG00000014947 I 0.750
ELAVL1 Homo sapiens ENSG00000066044 D 0.750
ELAVL2 Homo sapiens ENSG00000107105 D 0.897
ELAVL4 Homo sapiens ENSG00000162374 D 0.906
ELAVL3 Homo sapiens ENSG00000196361 I 1.000
ELAVL1 Gasterosteus aculeatus ENSGACG00000010657 I 0.752
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.906
ELAVL1 Gasterosteus aculeatus ENSGACG00000013329 I 0.730
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.967
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.883
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.745
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.906
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.887
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.906
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.897
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.750
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 1.000
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.906
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.750
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 1.000
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.897
ELAVL2 Macropus eugenii ENSMEUG00000006499 I 0.768
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.906
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.962
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.745
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.906
ELAVL2 Microcebus murinus ENSMICG00000001558 I 0.730
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.906
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.750
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.906
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.755
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.892
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.750
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.897
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.906
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.906
ENSMODG00000003850 Monodelphis domestica ENSMODG00000003850 I 0.724
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.901
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.750
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.934
Elavl3 Mus musculus ENSMUSG00000003410 I 0.991
Elavl2 Mus musculus ENSMUSG00000008489 I 0.897
Elavl4 Mus musculus ENSMUSG00000028546 I 0.906
Elavl1 Mus musculus ENSMUSG00000040028 I 0.741
ELAVL2 Ornithorhynchus anatinus ENSOANG00000009634 I 0.815
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.897
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.750
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.906
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 1.000
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.750
ELAVL2 Otolemur garnettii ENSOGAG00000016228 I 0.759
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.906
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.750
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.897
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.906
ELAVL1 Oryzias latipes ENSORLG00000000087 I 0.711
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.892
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.958
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.755
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.906
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.906
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.853
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.906
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.750
ENSPPYG00000009583 Pongo pygmaeus ENSPPYG00000009583 N 0.739
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.897
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.906
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.750
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.972
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.897
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.897
ELAVL4 Pteropus vampyrus ENSPVAG00000003632 I 0.848
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 1.000
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.741
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.897
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.991
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.906
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.897
ELAVL3 Sorex araneus ENSSARG00000005949 I 0.829
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.906
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.897
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.745
ELAVL3 Sus scrofa ENSSSCG00000013617 I 1.000
ELAVL4 Spermophilus tridecemlineatus ENSSTOG00000002834 I 0.773
ELAVL2 Spermophilus tridecemlineatus ENSSTOG00000007792 I 0.711
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.736
ELAVL3 Tupaia belangeri ENSTBEG00000006133 I 0.858
ELAVL4 Tupaia belangeri ENSTBEG00000011730 I 0.769
ELAVL2 Tupaia belangeri ENSTBEG00000017759 I 0.716
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.745
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.878
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.906
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.883
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.901
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.953
ELAVL1 Tetraodon nigroviridis ENSTNIG00000019823 I 0.741
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.901
ELAVL1 Takifugu rubripes ENSTRUG00000004559 I 0.754
ELAVL1 Takifugu rubripes ENSTRUG00000007296 I 0.735
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.887
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.967
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.906
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.750
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.886
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 1.000
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.892
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.897
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.906
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.911
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.745
elavl2 Xenopus tropicalis ENSXETG00000009387 I 0.755
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.953
estExt_Genewise1Plus.C_1660036 Capitella teleta estExt_Genewise1Plus.C_1660036 I 0.709
Rbp9 Drosophila melanogaster FBgn0010263 D 0.717
GF14992 Drosophila ananassae FBgn0092017 I 0.705
GG24901 Drosophila erecta FBgn0117030 I 0.705
GH13638 Drosophila grimshawi FBgn0121114 I 0.717
GI11879 Drosophila mojavensis FBgn0134637 I 0.705
GL26299 Drosophila persimilis FBgn0163881 I 0.722
GM18380 Drosophila sechellia FBgn0173287 I 0.705
GJ13991 Drosophila virilis FBgn0201209 I 0.705
GK14865 Drosophila willistoni FBgn0216870 I 0.705
GE18193 Drosophila yakuba FBgn0235624 I 0.705
GA28809-RA Drosophila pseudoobscura FBgn0250168 I 0.705
fgenesh1_pg.C_scaffold_8000205 Daphnia pulex fgenesh1_pg.C_scaffold_8000205 I 0.714
fgenesh2_pg.C_sca_14000012 Lottia gigantea fgenesh2_pg.C_sca_14000012 I 0.731
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.765
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.750
Q1JQ73 Xenopus laevis Q1JQ73 I 0.712
Q5U259 Xenopus laevis Q5U259 I 0.741
Q91584 Xenopus laevis Q91584 I 0.958
Q91903 Xenopus laevis Q91903 I 0.901