GRMZM2G100794 (Zea mays)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 GRMZM2G100794 T05714_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G100794_P01 CCCH ZF 56 81
GRMZM2G100794_P01 CCCH ZF 101 126
GRMZM2G100794_P01 CCCH ZF 147 172
GRMZM2G100794_P01 CCCH ZF 308 334
GRMZM2G100794_P01 CCCH ZF 354 380

Links

Other CCCH ZF family RBPs
Other Zea mays RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK23881.1 Cannabis sativa PK23881.1 N 0.843
cassava17662.valid.m1 Manihot esculenta cassava17662.valid.m1 N 0.858
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.724
Glyma09g38650.1 Glycine max Glyma09g38650.1 N 0.858
Glyma10g31370.1 Glycine max Glyma10g31370.1 N 0.843
Glyma18g47660.1 Glycine max Glyma18g47660.1 N 0.828
Glyma20g36140.1 Glycine max Glyma20g36140.1 N 0.828
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.784
gw1.151.82.1 Selaginella moellendorfii gw1.151.82.1 N 0.711
mgf007299m Mimulus guttatus mgf007299m N 0.813
GRMZM2G087032 Zea mays GRMZM2G087032 N 0.799
GRMZM2G107491 Zea mays GRMZM2G107491 N 0.806
GRMZM2G146514 Zea mays GRMZM2G146514 N 0.962
Medtr7g089530 Medicago truncatula Medtr7g089530 N 0.806
chr1.CM1413.200.nd Lotus japonicus chr1.CM1413.200.nd N 0.836
MDP0000178517 Malus x domestica MDP0000178517 N 0.789
MDP0000577111 Malus x domestica MDP0000577111 N 0.729
MDP0000665604 Malus x domestica MDP0000665604 N 0.729
cassava12890.valid.m1 Manihot esculenta cassava12890.valid.m1 N 0.843
cassava12889.valid.m1 Manihot esculenta cassava12889.valid.m1 N 0.843
30128.m009030 Ricinus communis 30128.m009030 N 0.858
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.701
ZFN1 Arabidopsis thaliana AT3G02830-TAIR-G N 0.821
ZFN3 Arabidopsis thaliana AT5G16540-TAIR-G N 0.805
BGIOSIBCE004747 Oryza indica BGIOSIBCE004747 N 0.754
BGIOSIBCE036312 Oryza indica BGIOSIBCE036312 N 0.865
BRADI2G58770 Brachypodium distachyon BRADI2G58770 N 0.791
BRADI4G08050 Brachypodium distachyon BRADI4G08050 N 0.902
BRADI4G19010 Brachypodium distachyon BRADI4G19010 N 0.902
XM_002882207.1 Arabidopsis lyrata fgenesh2_kg.3__226__AT3G02830.1 N 0.821
XM_002871677.1 Arabidopsis lyrata fgenesh2_kg.6__1644__AT5G16540.1 N 0.797
LOC_Os01g68860 Oryza sativa LOC_Os01g68860 N 0.807
LOC_Os11g28270 Oryza sativa LOC_Os11g28270 N 0.932
LOC_Os12g21700 Oryza sativa LOC_Os12g21700 N 0.910
Sb03g043810 Sorghum bicolor Sb03g043810 N 0.806
SB05G013190 Sorghum bicolor Sb05g013190 N 0.977
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.701
29726.m004014 Ricinus communis 29726.m004014 N 0.701
ppa005813m Prunus persica ppa005813m N 0.858