FUBP1 (Gorilla gorilla)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSGGOG00000027554 T18912_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
KHSRP
M341_0.6 		Homo sapiens Sequence logo not available nUGUrUrU RIP-chip
Cook et al.(2011)
906_17437629.2 		0.774
KHSRP
M340_0.6 		Homo sapiens Sequence logo not available UwUAUUUw RIP-chip
Cook et al.(2011)
906_17437629.1 		0.774
KHSRP
M339_0.6 		Homo sapiens Sequence logo not available UAUUUAUw RIP-chip
Cook et al.(2011)
906_17437629 		0.774
KHSRP
M342_0.6 		Homo sapiens Sequence logo not available CnsCyUCC RIP-chip
Cook et al.(2011)
906_17437629.3 		0.774
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGGOP00000017520 KH 92 154
ENSGGOP00000017520 KH 177 241
ENSGGOP00000017520 KH 267 329
ENSGGOP00000017520 KH 368 433
ENSGGOP00000025250 KH 123 185
ENSGGOP00000025250 KH 208 272
ENSGGOP00000025250 KH 298 360
ENSGGOP00000025250 KH 399 464

Links

Other KH family RBPs
Other Gorilla gorilla RBPs

112 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
KHSRP Homo sapiens ENSG00000088247 D 0.774
ENSORLG00000003540 Oryzias latipes ENSORLG00000003540 I 0.860
KHSRP Oryzias latipes ENSORLG00000011882 I 0.716
FUBP1 Procavia capensis ENSPCAG00000012617 I 0.996
ENSPPYG00000009454 Pongo pygmaeus ENSPPYG00000009454 I 0.774
FUBP1 Meleagris gallopavo ENSMGAG00000009424 I 0.984
KHSRP Tetraodon nigroviridis ENSTNIG00000014067 I 0.700
FUBP1 Pan troglodytes ENSPTRG00000000888 I 1.000
KHSRP Pan troglodytes ENSPTRG00000010364 I 0.774
KHSRP Pteropus vampyrus ENSPVAG00000007251 I 0.774
KHSRP Ochotona princeps ENSOPRG00000010594 I 0.770
FUBP1 Otolemur garnettii ENSOGAG00000014233 I 0.996
KHSRP Microcebus murinus ENSMICG00000007863 I 0.759
FUBP1 Myotis lucifugus ENSMLUG00000014802 I 0.996
FUBP1 Macaca mulatta ENSMMUG00000002899 I 1.000
KHSRP Macaca mulatta ENSMMUG00000005597 I 0.774
KHSRP Monodelphis domestica ENSMODG00000001952 I 0.720
Khsrp Mus musculus ENSMUSG00000007670 I 0.774
Fubp1 Mus musculus ENSMUSG00000028034 I 0.992
FUBP1 Ornithorhynchus anatinus ENSOANG00000009777 I 0.996
FUBP1 Oryctolagus cuniculus ENSOCUG00000002225 I 0.923
ENSSSCG00000003767 Sus scrofa ENSSSCG00000003767 I 0.996
ENSSSCG00000003771 Sus scrofa ENSSSCG00000003771 I 0.996
Ame_R010564 Ailuropoda melanoleuca Ame_R010564 I 0.992
Ame_R016412 Ailuropoda melanoleuca Ame_R016412 I 0.774
AAH44277 Xenopus laevis AAH44277 I 0.922
AAH70981 Xenopus laevis AAH70981 I 0.930
AAI61696 Xenopus laevis AAI61696 I 0.747
AAI69815 Xenopus laevis AAI69815 I 0.930
AAI69923 Xenopus laevis AAI69923 I 0.743
AAN77160 Xenopus laevis AAN77160 I 0.743
fubp1 Xenopus tropicalis ENSXETG00000013137 I 0.946
FUBP1 Vicugna pacos ENSVPAG00000004709 I 0.996
KHSRP Tursiops truncatus ENSTTRG00000010390 I 0.774
KHSRP Sus scrofa ENSSSCG00000013538 I 0.774
KHSRP Spermophilus tridecemlineatus ENSSTOG00000002371 I 0.774
FUBP1 Spermophilus tridecemlineatus ENSSTOG00000014312 I 0.981
FUBP1 Taeniopygia guttata ENSTGUG00000006841 I 0.970
ENSTRUG00000004615 Takifugu rubripes ENSTRUG00000004615 I 0.860
KHSRP Takifugu rubripes ENSTRUG00000010395 I 0.708
FUBP1 Tarsius syrichta ENSTSYG00000000148 I 0.988
FUBP1 Tursiops truncatus ENSTTRG00000000096 I 0.996
AAN77161 Xenopus laevis AAN77161 I 0.903
Khsrp Dipodomys ordii ENSDORG00000002447 I 0.770
KHSRP Gasterosteus aculeatus ENSGACG00000018990 I 0.708
FUBP1 Choloepus hoffmanni ENSCHOG00000008177 I 0.992
ENSGACG00000016563 Gasterosteus aculeatus ENSGACG00000016563 I 0.869
FUBP1 Callithrix jacchus ENSCJAG00000007062 I 0.996
KHSRP Gasterosteus aculeatus ENSGACG00000012422 I 0.732
KHSRP Callithrix jacchus ENSCJAG00000016627 I 0.774
FUBP1 Cavia porcellus ENSCPOG00000002757 I 0.996
KHSRP Cavia porcellus ENSCPOG00000005140 I 0.774
KHSRP Felis catus ENSFCAG00000003731 I 0.774
FUBP1 Homo sapiens ENSG00000162613 I 1.000
KHSRP Danio rerio ENSDARG00000026489 I 0.735
fubp1 Danio rerio ENSDARG00000029248 I 0.856
FUBP1 Equus caballus ENSECAG00000010867 I 0.996
Fubp1 Dipodomys ordii ENSDORG00000016534 I 0.996
LOC100065608 Equus caballus ENSECAG00000018305 I 0.774
Q5ZHW0_CHICK Gallus gallus ENSGALG00000008939 I 0.985
KHSRP Loxodonta africana ENSLAFG00000002426 I 0.774
FUBP1 Loxodonta africana ENSLAFG00000003273 I 0.996
LOC505564 Bos taurus ENSBTAG00000021018 I 0.774
Q08DJ3_BOVIN Bos taurus ENSBTAG00000008926 I 0.996
KHSRP Anolis carolinensis ENSACAG00000015398 I 0.774
FUBP1 Anolis carolinensis ENSACAG00000006310 I 0.988
KHSRP Macropus eugenii ENSMEUG00000016601 I 0.732
ENSPPYG00000001219 Pongo pygmaeus ENSPPYG00000001219 I 1.000
FUBP1 Canis familiaris ENSCAFG00000020361 I 0.996
KHSRP Gorilla gorilla ENSGGOG00000007028 I 0.774
KHSRP Canis familiaris ENSCAFG00000018667 I 0.774
FUBP3 Macaca mulatta ENSMMUG00000008249 N 0.798
FUBP3 Canis familiaris ENSCAFG00000019942 N 0.795
Ame_R003042 Ailuropoda melanoleuca Ame_R003042 N 0.798
FUBP3 Tetraodon nigroviridis ENSTNIG00000005858 N 0.771
estExt_fgenesh2_pg.C_1480047 Branchiostoma floridae estExt_fgenesh2_pg.C_1480047 N 0.700
AAH60400 Xenopus laevis AAH60400 N 0.787
ENSDARG00000007049 Danio rerio ENSDARG00000007049 N 0.752
FUBP3 Takifugu rubripes ENSTRUG00000013259 N 0.767
A6QP83_BOVIN Bos taurus ENSBTAG00000013072 N 0.795
FUBP3 Takifugu rubripes ENSTRUG00000018658 N 0.717
fubp3 Xenopus tropicalis ENSXETG00000001344 N 0.787
LOC100399862 Callithrix jacchus ENSCJAG00000020542 N 0.802
FUBP3 Tetraodon nigroviridis ENSTNIG00000009019 N 0.721
FUBP3 Taeniopygia guttata ENSTGUG00000004662 N 0.787
FUBP3 Dasypus novemcinctus ENSDNOG00000014533 N 0.779
FUBP3 Gasterosteus aculeatus ENSGACG00000016704 N 0.729
FUBP3 Ochotona princeps ENSOPRG00000008648 N 0.795
FUBP1 Ochotona princeps ENSOPRG00000001175 N 0.888
Q5ZM76_CHICK Gallus gallus ENSGALG00000003941 N 0.791
FUBP3 Ornithorhynchus anatinus ENSOANG00000001042 N 0.795
Fubp3 Mus musculus ENSMUSG00000026843 N 0.791
FUBP3 Gorilla gorilla ENSGGOG00000011318 N 0.798
FUBP3 Monodelphis domestica ENSMODG00000012105 N 0.783
FUBP3 Loxodonta africana ENSLAFG00000011611 N 0.795
FUBP3 Myotis lucifugus ENSMLUG00000008743 N 0.760
FUBP3 Microcebus murinus ENSMICG00000015452 N 0.802
FUBP3 Oryzias latipes ENSORLG00000007103 N 0.717
FUBP3 Oryzias latipes ENSORLG00000017565 N 0.767
LOC100069755 Equus caballus ENSECAG00000011500 N 0.764
Fubp3 Rattus norvegicus ENSRNOG00000009139 N 0.795
FUBP1 Pteropus vampyrus ENSPVAG00000014637 N 0.821
FUBP3 Cavia porcellus ENSCPOG00000010315 N 0.802
FUBP3 Pteropus vampyrus ENSPVAG00000001510 N 0.802
FUBP3 Pan troglodytes ENSPTRG00000021474 N 0.798
FUBP3 Felis catus ENSFCAG00000005113 N 0.791
ENSPPYG00000019693 Pongo pygmaeus ENSPPYG00000019693 N 0.798
FUBP3 Homo sapiens ENSG00000107164 N 0.798
FUBP3 Meleagris gallopavo ENSMGAG00000005342 N 0.791
FUBP3 Procavia capensis ENSPCAG00000001717 N 0.775
FUBP1 Microcebus murinus ENSMICG00000014463 N 0.840