CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBCK1
(
Tursiops truncatus
)
RanBP ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
IPR001876
ENSTTRG00000005104
T26881_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTTRP00000004793
RanBP ZF
196
221
GWQCPGCTFINKPTRPGCEMCCRARP
Links
Other
RanBP ZF
family RBPs
Other
Tursiops truncatus
RBPs
41 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Pum2
Mus musculus
ENSMUSG00000020594
D
0.000
PUM1
Homo sapiens
ENSG00000134644
D
0.000
PUM2
Homo sapiens
ENSG00000055917
D
0.000
pum
Drosophila melanogaster
FBgn0003165
D
0.000
PUM1
Pteropus vampyrus
ENSPVAG00000005207
I
0.000
PUM1
Tursiops truncatus
ENSTTRG00000007436
I
0.000
PUM2
Vicugna pacos
ENSVPAG00000005056
I
0.000
PUM1
Vicugna pacos
ENSVPAG00000005902
I
0.000
pum2
Xenopus tropicalis
ENSXETG00000008903
I
0.000
GF18428
Drosophila ananassae
FBgn0095446
I
0.000
GG17394
Drosophila erecta
FBgn0109620
I
0.000
PUM2
Tursiops truncatus
ENSTTRG00000004887
I
0.000
PUM2
Tarsius syrichta
ENSTSYG00000014463
I
0.000
PUM2
Takifugu rubripes
ENSTRUG00000018167
I
0.000
Pum2
Rattus norvegicus
ENSRNOG00000006180
I
0.000
Pum1
Rattus norvegicus
ENSRNOG00000011709
I
0.000
PUM1
Sorex araneus
ENSSARG00000003055
I
0.000
PUM1
Sus scrofa
ENSSSCG00000003591
I
0.000
PUM2
Sus scrofa
ENSSSCG00000008600
I
0.000
PUM2
Tupaia belangeri
ENSTBEG00000008729
I
0.000
PUM2
Taeniopygia guttata
ENSTGUG00000013149
I
0.000
PUM1
Tetraodon nigroviridis
ENSTNIG00000016983
I
0.000
PUM1
Takifugu rubripes
ENSTRUG00000013121
I
0.000
GH15257
Drosophila grimshawi
FBgn0122732
I
0.000
GL22345
Drosophila persimilis
FBgn0159937
I
0.000
PASA_GEN_0800110
Daphnia pulex
PASA_GEN_0800110
I
0.000
BGIBMGA003401
Bombyx mori
BGIBMGA003401
I
0.000
Ame_R002800
Ailuropoda melanoleuca
Ame_R002800
I
0.000
Ame_R012380
Ailuropoda melanoleuca
Ame_R012380
I
0.000
XP_001187223.1
Strongylocentrotus purpuratus
XP_001187223.1
I
0.000
XP_794621.2
Strongylocentrotus purpuratus
XP_794621.2
I
0.000
AAH80379
Xenopus laevis
AAH80379
I
0.000
AAL14121
Xenopus laevis
AAL14121
I
0.000
BAB20864
Xenopus laevis
BAB20864
I
0.000
estExt_Genewise1Plus.C_sca_670070
Lottia gigantea
estExt_Genewise1Plus.C_sca_670070
I
0.000
estExt_Genewise1Plus.C_4390035
Capitella teleta
estExt_Genewise1Plus.C_4390035
I
0.000
GM26283
Drosophila sechellia
FBgn0181138
I
0.000
GJ10105
Drosophila virilis
FBgn0197393
I
0.000
GK14049
Drosophila willistoni
FBgn0216055
I
0.000
GE24797
Drosophila yakuba
FBgn0241899
I
0.000
GA27465-RA
Drosophila pseudoobscura
FBgn0248832
I
0.000
PHUM490070
Pediculus humanus
PHUM490070
I
0.000
105390
Helobdella robusta
105390
I
0.000
e_gw1.9.429.1
Trichoplax adhaerens
e_gw1.9.429.1
I
0.000
e_gw.54.41.1
Nematostella vectensis
e_gw.54.41.1
I
0.000
BAC57980
Xenopus laevis
BAC57980
I
0.000
CpipJ_CPIJ016844
Culex pipiens
CpipJ_CPIJ016844
I
0.000
PUM1
Canis familiaris
ENSCAFG00000011205
I
0.000
ENSCING00000003888
Ciona intestinalis
ENSCING00000003888
I
0.000
LOC100415491
Callithrix jacchus
ENSCJAG00000006035
I
0.000
PUM2
Callithrix jacchus
ENSCJAG00000007450
I
0.000
PUM2
Cavia porcellus
ENSCPOG00000007075
I
0.000
PUM1
Equus caballus
ENSECAG00000021369
I
0.000
PUM2
Equus caballus
ENSECAG00000021930
I
0.000
PUM1
Erinaceus europaeus
ENSEEUG00000003871
I
0.000
PUM2
Canis familiaris
ENSCAFG00000003839
I
0.000
PUM1
Bos taurus
ENSBTAG00000018979
I
0.000
PUM2
Bos taurus
ENSBTAG00000011155
I
0.000
amel4_ncbi_hmm4895
Apis mellifera
amel4_ncbi_hmm4895
I
0.000
DGIL_AUG5s1082g1t1
Acyrtosiphon pisum
DGIL_AUG5s1082g1t1
I
0.000
nasonia_NCBI_hmm823294
Nasonia vitripennis
nasonia_NCBI_hmm823294
I
0.000
AAEL012420
Aedes aegypti
AAEL012420
I
0.000
AGAP003914
Anopheles gambiae
AGAP003914
I
0.000
CPIJ016844
Culex quinquefasciatus
CPIJ016844
I
0.000
PUM1
Anolis carolinensis
ENSACAG00000000682
I
0.000
PUM2
Anolis carolinensis
ENSACAG00000010491
I
0.000
PUM1
Gasterosteus aculeatus
ENSGACG00000005717
I
0.000
PUM2
Gasterosteus aculeatus
ENSGACG00000009670
I
0.000
PUM1_CHICK
Gallus gallus
ENSGALG00000000597
I
0.000
ENSOANG00000003230
Ornithorhynchus anatinus
ENSOANG00000003230
I
0.000
PUM1
Oryctolagus cuniculus
ENSOCUG00000008641
I
0.000
PUM2
Oryctolagus cuniculus
ENSOCUG00000017908
I
0.000
PUM1
Oryzias latipes
ENSORLG00000011482
I
0.000
PUM2
Oryzias latipes
ENSORLG00000012611
I
0.000
ENSPPYG00000001621
Pongo pygmaeus
ENSPPYG00000001621
I
0.000
ENSPPYG00000012617
Pongo pygmaeus
ENSPPYG00000012617
I
0.000
PUM1
Pan troglodytes
ENSPTRG00000000453
I
0.000
Pum1
Mus musculus
ENSMUSG00000028580
I
0.000
PUM1
Monodelphis domestica
ENSMODG00000017067
I
0.000
PUM2
Monodelphis domestica
ENSMODG00000009811
I
0.000
Q2VB18_CHICK
Gallus gallus
ENSGALG00000016481
I
0.000
PUM2
Gorilla gorilla
ENSGGOG00000011374
I
0.000
PUM1
Loxodonta africana
ENSLAFG00000003178
I
0.000
PUM2
Loxodonta africana
ENSLAFG00000009278
I
0.000
PUM1
Meleagris gallopavo
ENSMGAG00000000724
I
0.000
PUM2
Meleagris gallopavo
ENSMGAG00000014040
I
0.000
PUM1
Microcebus murinus
ENSMICG00000007713
I
0.000
Q3YAQ1_MACMU
Macaca mulatta
ENSMMUG00000013520
I
0.000
PUM2
Pan troglodytes
ENSPTRG00000011692
I
0.000