SRSF5 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000016589 T35143_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF5
M357_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
985_9037021 		0.736
SRSF5
M356_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
984_9037021 		0.736
SRSF5
M355_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
983_9037021 		0.736
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.729
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000024403 RRM 6 68
ENSCAFP00000024403 RRM 110 175

Links

Other RRM family RBPs
Other Canis familiaris RBPs

133 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw1.3.1174.1 Thielavia terrestris e_gw1.3.1174.1 N 0.000
SB04G025800 Sorghum bicolor Sb04g025800 N 0.000
Ppa-ncbp-2 Pristionchus pacificus PPA17381 N 0.000
A9PIB0_POPTR Populus trichocarpa POPTR_0007s01170 N 0.000
PHUM535920 Pediculus humanus PHUM535920 N 0.000
NCU00210 Neurospora crassa NCU00210 N 0.000
LOC_Os02g39890 Oryza sativa LOC_Os02g39890 N 0.000
NCBP2_IXOSC Ixodes scapularis ISCW017479 N 0.000
GSVIVG00020599001 Vitis vinifera GSVIVG00020599001 N 0.000
29983.m003140 Ricinus communis 29983.m003140 N 0.000
91084 Helobdella robusta 91084 N 0.000
e_gw1.1.927.1 Trichoplax adhaerens e_gw1.1.927.1 N 0.000
e_gw1.18.125.1 Batrachochytrium dendrobatidis e_gw1.18.125.1 N 0.000
e_gw1.17.191.1 Trichoderma reesei e_gw1.17.191.1 N 0.000
e_gw1.10.746.1 Trichoderma virens e_gw1.10.746.1 N 0.000
Cucsa.174450 Cucumis sativus Cucsa.174450 N 0.000
cassava43646.valid.m1 Manihot esculenta cassava43646.valid.m1 N 0.000
cassava43645.valid.m1 Manihot esculenta cassava43645.valid.m1 N 0.000
Aqu1.228507 Amphimedon queenslandica Aqu1.228507 N 0.000
XM_002863560.1 Arabidopsis lyrata fgenesh2_kg.8__389__AT5G44200.2 N 0.000
GE25514 Drosophila yakuba FBgn0242580 N 0.000
GK11244 Drosophila willistoni FBgn0213255 N 0.000
Cbp20 Drosophila melanogaster FBgn0022943 N 0.000
ncbp2 Xenopus tropicalis ENSXETG00000019384 N 0.000
NCBP2 Vicugna pacos ENSVPAG00000010369 N 0.000
NCBP2 Tursiops truncatus ENSTTRG00000013908 N 0.000
NCBP2 Takifugu rubripes ENSTRUG00000018355 N 0.000
NCBP2 Tetraodon nigroviridis ENSTNIG00000006065 N 0.000
NCBP2 Taeniopygia guttata ENSTGUG00000008864 N 0.000
B5G279_TAEGU Taeniopygia guttata ENSTGUG00000007323 N 0.000
GA11577-RA Drosophila pseudoobscura FBgn0071628 N 0.000
GF16759 Drosophila ananassae FBgn0093780 N 0.000
GJ23276 Drosophila virilis FBgn0210378 N 0.000
GJ18756 Drosophila virilis FBgn0205908 N 0.000
GD19204 Drosophila simulans FBgn0190709 N 0.000
GM15280 Drosophila sechellia FBgn0170200 N 0.000
GL12592 Drosophila persimilis FBgn0150198 N 0.000
GI23717 Drosophila mojavensis FBgn0146442 N 0.000
GH15101 Drosophila grimshawi FBgn0122576 N 0.000
GG22670 Drosophila erecta FBgn0114835 N 0.000
NCBP2 Tupaia belangeri ENSTBEG00000015222 N 0.000
P52299 Xenopus laevis P52299 N 0.000
Minc06129 Meloidogyne incognita Minc06129 N 0.000
Minc02990 Meloidogyne incognita Minc02990 N 0.000
MDP0000315402 Malus x domestica MDP0000315402 N 0.000
gw1.12.351.1 Coccomyxa C 169 gw1.12.351.1 N 0.000
gw1.11.372.1 Chlorella vulgaris gw1.11.372.1 N 0.000
GSTUMT00010626001 Tuber melanosporum GSTUMT00010626001 N 0.000
chr3.CM0160.780.nd Lotus japonicus chr3.CM0160.780.nd N 0.000
Ame_R004608 Ailuropoda melanoleuca Ame_R004608 N 0.000
Pa_7_2520 Podospora anserina Pa_7_2520 N 0.000
PDK_20s1327431g003 Phoenix dactylifera PDK_20s1327431g003 N 0.000
CAA59259 Xenopus laevis CAA59259 N 0.000
AAH72902 Xenopus laevis AAH72902 N 0.000
2118330B Xenopus laevis 2118330B N 0.000
XP_802051.1 Strongylocentrotus purpuratus XP_802051.1 N 0.000
XP_002166119.1 Hydra magnipapillata XP_002166119.1 N 0.000
XP_002160076.1 Hydra magnipapillata XP_002160076.1 N 0.000
XP_001187788.1 Strongylocentrotus purpuratus XP_001187788.1 N 0.000
ppa010346m Prunus persica ppa010346m N 0.000
BGIBMGA007585 Bombyx mori BGIBMGA007585 N 0.000
Sjc_0008080 Schistosoma japonicum Sjc_0008080 N 0.000
EFA74823.1 Polysphondylium pallidum EFA74823.1 N 0.000
estExt_gwp.C_920142 Nematostella vectensis estExt_gwp.C_920142 N 0.000
estExt_Genewise1Plus.C_50921 Neurospora discreta estExt_Genewise1Plus.C_50921 N 0.000
estExt_Genewise1Plus.C_40730 Myceliophthora thermophila estExt_Genewise1Plus.C_40730 N 0.000
estExt_Genewise1Plus.C_150343 Trichoderma atroviride estExt_Genewise1Plus.C_150343 N 0.000
estExt_Genewise1.C_sca_180152 Lottia gigantea estExt_Genewise1.C_sca_180152 N 0.000
estExt_Genewise1.C_5160046 Capitella teleta estExt_Genewise1.C_5160046 N 0.000
estExt_Genewise1.C_10147 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10147 N 0.000
estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 Nectria haematococca estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 N 0.000
fgeneshMC_pm.5_#_40 Mucor circinelloides fgeneshMC_pm.5_#_40 N 0.000
GID1.0044779 Dictyostelium purpureum GID1.0044779 N 0.000
EAT82863.2 Phaeosphaeria nodorum EAT82863.2 N 0.000
GRMZM2G034804 Zea mays GRMZM2G034804 N 0.000
mgf009822m Mimulus guttatus mgf009822m N 0.000
gw.93.114.1 Branchiostoma floridae gw.93.114.1 N 0.000
gw.81.90.1 Branchiostoma floridae gw.81.90.1 N 0.000
gw1.29.143.1 Phycomyces blakesleeanus gw1.29.143.1 N 0.000
Glyma13g37030.1 Glycine max Glyma13g37030.1 N 0.000
Glyma12g33400.1 Glycine max Glyma12g33400.1 N 0.000
estExt_fgenesh1_kg.C_1730002 Daphnia pulex estExt_fgenesh1_kg.C_1730002 N 0.000
ENSSTOG00000001584 Spermophilus tridecemlineatus ENSSTOG00000001584 N 0.000
NCBP2L Canis familiaris ENSCAFG00000017990 N 0.000
NCBP2_AEDAE Aedes aegypti AAEL006135 N 0.000
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.000
nasonia_NCBI_hmm134534 Nasonia vitripennis nasonia_NCBI_hmm134534 N 0.000
DGIL_AUG5s15103g4t1 Acyrtosiphon pisum DGIL_AUG5s15103g4t1 N 0.000
DGIL_AUG5s12516g4t1 Acyrtosiphon pisum DGIL_AUG5s12516g4t1 N 0.000
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.000
PK11911.1 Cannabis sativa PK11911.1 N 0.000
WUBG_16568 Wuchereria bancrofti WUBG_16568 N 0.000
NCBP2_ANOGA Anopheles gambiae AGAP002547 N 0.000
CBP20 Arabidopsis thaliana AT5G44200-TAIR-G N 0.000
NCBP2 Canis familiaris ENSCAFG00000013100 N 0.000
NCBP2_BOVIN Bos taurus ENSBTAG00000008873 N 0.000
ENSACAG00000015128 Anolis carolinensis ENSACAG00000015128 N 0.000
ncbp2 Dictyostelium discoideum DDB_G0287197 N 0.000
NCBP2_CULQU Culex quinquefasciatus CPIJ003555 N 0.000
NFIA_084190 Neosartorya fischeri CADNFIAG00008064 N 0.000
AFUA_2G08570 Aspergillus fumigatus CADAFUAG00004718 N 0.000
BRADI3G48560 Brachypodium distachyon BRADI3G48560 N 0.000
TESG_01120 Trichophyton tonsurans TESG_01120 N 0.000
TERG_03424 Trichophyton rubrum TERG_03424 N 0.000
TEQG_01953 Trichophyton equinum TEQG_01953 N 0.000
GLRG_00177 Colletotrichum graminicola GLRG_00177 N 0.000
FVEG_07036 Fusarium verticillioides FVEG_07036 N 0.000
CPSG_08054 Coccidioides posadasii CPSG_08054 N 0.000
CpipJ_CPIJ003555 Culex pipiens CpipJ_CPIJ003555 N 0.000
CIMG_00837 Coccidioides immitis CIMG_00837 N 0.000
Bm1_02935 Brugia malayi Bm1_02935 N 0.000
BDBG_08091 Blastomyces dermatitidis BDBG_08091 N 0.000
BC1G_04395 Botrytis cinerea BC1G_04395 N 0.000
HCAG_07341 Histoplasma capsulatum HCAG_07341 N 0.000
LOAG_03270 Loa loa LOAG_03270 N 0.000
SS1G_13629 Sclerotinia sclerotiorum SS1G_13629 N 0.000
SPPG_00516 Spizellomyces punctatus SPPG_00516 N 0.000
SNOG_09598 Stagonospora nodorum SNOG_09598 N 0.000
PTRG_00402 Pyrenophora tritici repentis PTRG_00402 N 0.000
PABG_07236 Paracoccidioides brasiliensis PABG_07236 N 0.000
MGYG_02166 Microsporum gypseum MGYG_02166 N 0.000
MGG_06296 Magnaporthe oryzae MGG_06296 N 0.000
MCYG_04468 Microsporum canis MCYG_04468 N 0.000
AMAG_02834 Allomyces macrogynus AMAG_02834 N 0.000
NCBP2L Sus scrofa ENSSSCG00000012562 N 0.000
ENSOCUG00000014372 Oryctolagus cuniculus ENSOCUG00000014372 N 0.000
NCBP2 Oryctolagus cuniculus ENSOCUG00000006738 N 0.000
Ncbp2 Mus musculus ENSMUSG00000022774 N 0.000
LOC100020122 Monodelphis domestica ENSMODG00000024608 N 0.000
XM_001367531.1 Monodelphis domestica ENSMODG00000024607 N 0.000
XM_001371285.1 Monodelphis domestica ENSMODG00000023276 N 0.000
XM_001373408.1 Monodelphis domestica ENSMODG00000015908 N 0.000
NCBP2 Macaca mulatta ENSMMUG00000007825 N 0.000
NCBP2 Otolemur garnettii ENSOGAG00000005009 N 0.000
ENSOPRG00000007634 Ochotona princeps ENSOPRG00000007634 N 0.000
ENSSSCG00000011840 Sus scrofa ENSSSCG00000011840 N 0.000
ENSSSCG00000011835 Sus scrofa ENSSSCG00000011835 N 0.000
NCBP2 Sorex araneus ENSSARG00000014294 N 0.000
NCBP2 Pteropus vampyrus ENSPVAG00000017273 N 0.000
NCBP2 Pan troglodytes ENSPTRG00000015789 N 0.000
ENSPPYG00000014449 Pongo pygmaeus ENSPPYG00000014449 N 0.000
NCBP2 Procavia capensis ENSPCAG00000003219 N 0.000
NCBP2 Oryzias latipes ENSORLG00000011235 N 0.000
NCBP2 Myotis lucifugus ENSMLUG00000017500 N 0.000
NCBP2L Microcebus murinus ENSMICG00000016081 N 0.000
NCBP2 Microcebus murinus ENSMICG00000003162 N 0.000
NCBP2 Equus caballus ENSECAG00000016153 N 0.000
NCBP2L Equus caballus ENSECAG00000003478 N 0.000
ncbp2 Danio rerio ENSDARG00000014898 N 0.000
ENSCSAVG00000005823 Ciona savignyi ENSCSAVG00000005823 N 0.000
NCBP2 Cavia porcellus ENSCPOG00000002976 N 0.000
LOC100404338 Callithrix jacchus ENSCJAG00000013735 N 0.000
ENSCING00000016926 Ciona intestinalis ENSCING00000016926 N 0.000
ENSCING00000003079 Ciona intestinalis ENSCING00000003079 N 0.000
NCBP2 Homo sapiens ENSG00000114503 N 0.000
NCBP2 Gasterosteus aculeatus ENSGACG00000006238 N 0.000
ENSMGAG00000006728 Meleagris gallopavo ENSMGAG00000006728 N 0.000
ENSMGAG00000002257 Meleagris gallopavo ENSMGAG00000002257 N 0.000
ENSMEUG00000008126 Macropus eugenii ENSMEUG00000008126 N 0.000
ENSMEUG00000004730 Macropus eugenii ENSMEUG00000004730 N 0.000
NCBP2L Loxodonta africana ENSLAFG00000027581 N 0.000
NCBP2 Loxodonta africana ENSLAFG00000006372 N 0.000
NCBP2 Gallus gallus ENSGALG00000006843 N 0.000
NCBP2_CHICK Gallus gallus ENSGALG00000005753 N 0.000
ENSCHOG00000005967 Choloepus hoffmanni ENSCHOG00000005967 N 0.000