ENSMICG00000009121 (Microcebus murinus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMICG00000009121 T38532_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.806
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.806
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.806
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.742
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.735
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMICP00000008309 RRM 13 83
ENSMICP00000008309 RRM 101 169
ENSMICP00000008309 RRM 242 262
ENSMICP00000008309 RRM 296 364

Links

Other RRM family RBPs
Other Microcebus murinus RBPs

94 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC1 Homo sapiens ENSG00000070756 D 0.806
PABPC4 Homo sapiens ENSG00000090621 D 0.735
PABPC3 Homo sapiens ENSG00000151846 D 0.742
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.735
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.735
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.756
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.713
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.735
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.806
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.731
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.806
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.753
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.806
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.806
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.781
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.767
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.724
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.724
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.735
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.760
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.806
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.735
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.803
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.746
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.789
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.747
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.724
AAH72110 Xenopus laevis AAH72110 I 0.781
AAH73435 Xenopus laevis AAH73435 I 0.735
AAH80020 Xenopus laevis AAH80020 I 0.710
AAI08463 Xenopus laevis AAI08463 I 0.781
AAK29408 Xenopus laevis AAK29408 I 0.710
CAA40721 Xenopus laevis CAA40721 I 0.774
P20965 Xenopus laevis P20965 I 0.774
Q6GR16 Xenopus laevis Q6GR16 I 0.710
Q6IP09 Xenopus laevis Q6IP09 I 0.781
AAH71118 Xenopus laevis AAH71118 I 0.710
AAH52100 Xenopus laevis AAH52100 I 0.774
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.785
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.724
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.724
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.781
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.785
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.806
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.789
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.778
AAA60936 Xenopus laevis AAA60936 I 0.771
Q98SP8 Xenopus laevis Q98SP8 I 0.710
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.806
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.720
pabpc4 Danio rerio ENSDARG00000059259 I 0.731
LOC100054235 Equus caballus ENSECAG00000009396 I 0.735
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.728
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.720
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.781
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.778
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.728
PABPC4 Gallus gallus ENSGALG00000003800 I 0.735
PABPC1L Gallus gallus ENSGALG00000004123 I 0.724
pabpc1b Danio rerio ENSDARG00000021140 I 0.782
pabpc1a Danio rerio ENSDARG00000017219 I 0.785
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.806
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.735
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.806
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.735
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.735
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.806
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.778
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.738
pabpc1l Danio rerio ENSDARG00000002597 I 0.706
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.735
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.735
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.806
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.806
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.749
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.749
Gm10110 Mus musculus ENSMUSG00000062093 I 0.731
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.806
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.731
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.735
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.806
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.728
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.725
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.767
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.728
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.735
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.756
ENSMLUG00000012245 Myotis lucifugus ENSMLUG00000012245 I 0.715
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.735
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.806
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.753
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.800
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.806
PABPC1L Ornithorhynchus anatinus ENSOANG00000015793 N 0.827