PABPC1L (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000010322 T40178_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.790
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.790
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.790
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.766
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.738
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000012937 RRM 13 83
ENSORLP00000012937 RRM 101 169
ENSORLP00000012937 RRM 193 266
ENSORLP00000012937 RRM 300 368

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

131 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.873
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.859
pabpc1l Danio rerio ENSDARG00000002597 I 0.830
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.816
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.816
Q6GR16 Xenopus laevis Q6GR16 I 0.816
AAH71118 Xenopus laevis AAH71118 I 0.816
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.816
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.816
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.816
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.813
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.813
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.813
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.813
PABPC1 Homo sapiens ENSG00000070756 D 0.813
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.813
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.813
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.813
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.813
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.813
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.813
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.813
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.810
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.809
AAK29408 Xenopus laevis AAK29408 I 0.809
Q98SP8 Xenopus laevis Q98SP8 I 0.809
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.809
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.809
AAH80020 Xenopus laevis AAH80020 I 0.809
pabpc1b Danio rerio ENSDARG00000021140 I 0.806
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.806
pabpc1a Danio rerio ENSDARG00000017219 I 0.806
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.806
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.802
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.802
PABPC1L Gallus gallus ENSGALG00000004123 I 0.802
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.802
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.802
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.799
CAA40721 Xenopus laevis CAA40721 I 0.799
P20965 Xenopus laevis P20965 I 0.799
AAH52100 Xenopus laevis AAH52100 I 0.799
AAA60936 Xenopus laevis AAA60936 I 0.795
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.795
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.792
Q6IP09 Xenopus laevis Q6IP09 I 0.792
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.792
AAI08463 Xenopus laevis AAI08463 I 0.792
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.792
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.792
AAH72110 Xenopus laevis AAH72110 I 0.792
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.788
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.788
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.788
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.788
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.788
PABPC4 Homo sapiens ENSG00000090621 D 0.788
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.788
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.784
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.784
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.784
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.784
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.784
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.784
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.784
LOC100054235 Equus caballus ENSECAG00000009396 I 0.784
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.784
PABPC4 Gallus gallus ENSGALG00000003800 I 0.781
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.781
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.781
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.781
AAH73435 Xenopus laevis AAH73435 I 0.781
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.781
Gm10110 Mus musculus ENSMUSG00000062093 I 0.781
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.777
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.777
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.777
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.777
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.777
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.774
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.774
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.772
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.770
pabpc4 Danio rerio ENSDARG00000059259 I 0.770
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.770
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.770
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.770
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.770
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.768
PABPC1L Bos taurus ENSBTAG00000016849 I 0.767
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.767
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.767
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.767
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.767
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.767
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.767
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.763
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.763
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.760
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.760
PABPC3 Homo sapiens ENSG00000151846 D 0.756
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.756
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.756
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.756
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.756
LOC100070836 Equus caballus ENSECAG00000022681 I 0.753
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.753
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.753
PABPC1L Homo sapiens ENSG00000101104 I 0.753
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.753
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.753
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.746
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.746
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.742
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.735
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.735
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.724
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.724
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.724
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.724
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.721
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.721
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.721
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.711
AAEL010318 Aedes aegypti AAEL010318 I 0.711
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.711
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.704
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.704
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.704
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.704
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.700