Pigz (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000001746 T41010_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000002381 RRM 42 112

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

165 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw1.3.1174.1 Thielavia terrestris e_gw1.3.1174.1 N 0.718
SB04G025800 Sorghum bicolor Sb04g025800 N 0.761
Ppa-ncbp-2 Pristionchus pacificus PPA17381 N 0.718
A9PIB0_POPTR Populus trichocarpa POPTR_0007s01170 N 0.718
PHUM535920 Pediculus humanus PHUM535920 N 0.859
NCU00210 Neurospora crassa NCU00210 N 0.718
LOC_Os02g39890 Oryza sativa LOC_Os02g39890 N 0.732
NCBP2_IXOSC Ixodes scapularis ISCW017479 N 0.817
GSVIVG00020599001 Vitis vinifera GSVIVG00020599001 N 0.746
29983.m003140 Ricinus communis 29983.m003140 N 0.718
91084 Helobdella robusta 91084 N 0.803
e_gw1.1.927.1 Trichoplax adhaerens e_gw1.1.927.1 N 0.704
e_gw1.18.125.1 Batrachochytrium dendrobatidis e_gw1.18.125.1 N 0.718
e_gw1.17.191.1 Trichoderma reesei e_gw1.17.191.1 N 0.746
e_gw1.10.746.1 Trichoderma virens e_gw1.10.746.1 N 0.732
Cucsa.174450 Cucumis sativus Cucsa.174450 N 0.746
cassava43646.valid.m1 Manihot esculenta cassava43646.valid.m1 N 0.746
cassava43645.valid.m1 Manihot esculenta cassava43645.valid.m1 N 0.746
Aqu1.228507 Amphimedon queenslandica Aqu1.228507 N 0.732
XM_002863560.1 Arabidopsis lyrata fgenesh2_kg.8__389__AT5G44200.2 N 0.718
GE25514 Drosophila yakuba FBgn0242580 N 0.775
GK11244 Drosophila willistoni FBgn0213255 N 0.775
Cbp20 Drosophila melanogaster FBgn0022943 N 0.775
ncbp2 Xenopus tropicalis ENSXETG00000019384 N 0.887
NCBP2 Vicugna pacos ENSVPAG00000010369 N 0.986
NCBP2 Tursiops truncatus ENSTTRG00000013908 N 0.986
NCBP2 Takifugu rubripes ENSTRUG00000018355 N 0.873
NCBP2 Tetraodon nigroviridis ENSTNIG00000006065 N 0.859
NCBP2 Taeniopygia guttata ENSTGUG00000008864 N 0.915
B5G279_TAEGU Taeniopygia guttata ENSTGUG00000007323 N 0.859
GA11577-RA Drosophila pseudoobscura FBgn0071628 N 0.775
GF16759 Drosophila ananassae FBgn0093780 N 0.789
GJ23276 Drosophila virilis FBgn0210378 N 0.789
GJ18756 Drosophila virilis FBgn0205908 N 0.761
GD19204 Drosophila simulans FBgn0190709 N 0.775
GM15280 Drosophila sechellia FBgn0170200 N 0.775
GL12592 Drosophila persimilis FBgn0150198 N 0.775
GI23717 Drosophila mojavensis FBgn0146442 N 0.789
GH15101 Drosophila grimshawi FBgn0122576 N 0.789
GG22670 Drosophila erecta FBgn0114835 N 0.789
NCBP2 Tupaia belangeri ENSTBEG00000015222 N 1.000
P52299 Xenopus laevis P52299 N 0.873
Minc06129 Meloidogyne incognita Minc06129 N 0.704
Minc02990 Meloidogyne incognita Minc02990 N 0.704
MDP0000315402 Malus x domestica MDP0000315402 N 0.732
gw1.12.351.1 Coccomyxa C 169 gw1.12.351.1 N 0.718
gw1.11.372.1 Chlorella vulgaris gw1.11.372.1 N 0.718
GSTUMT00010626001 Tuber melanosporum GSTUMT00010626001 N 0.718
chr3.CM0160.780.nd Lotus japonicus chr3.CM0160.780.nd N 0.732
Ame_R004608 Ailuropoda melanoleuca Ame_R004608 N 1.000
Pa_7_2520 Podospora anserina Pa_7_2520 N 0.704
PDK_20s1327431g003 Phoenix dactylifera PDK_20s1327431g003 N 0.761
CAA59259 Xenopus laevis CAA59259 N 0.859
AAH72902 Xenopus laevis AAH72902 N 0.873
2118330B Xenopus laevis 2118330B N 0.859
XP_802051.1 Strongylocentrotus purpuratus XP_802051.1 N 0.746
XP_002166119.1 Hydra magnipapillata XP_002166119.1 N 0.817
XP_002160076.1 Hydra magnipapillata XP_002160076.1 N 0.845
XP_001187788.1 Strongylocentrotus purpuratus XP_001187788.1 N 0.746
ppa010346m Prunus persica ppa010346m N 0.732
BGIBMGA007585 Bombyx mori BGIBMGA007585 N 0.831
Sjc_0008080 Schistosoma japonicum Sjc_0008080 N 0.732
EFA74823.1 Polysphondylium pallidum EFA74823.1 N 0.732
estExt_gwp.C_920142 Nematostella vectensis estExt_gwp.C_920142 N 0.817
estExt_Genewise1Plus.C_50921 Neurospora discreta estExt_Genewise1Plus.C_50921 N 0.718
estExt_Genewise1Plus.C_40730 Myceliophthora thermophila estExt_Genewise1Plus.C_40730 N 0.718
estExt_Genewise1Plus.C_150343 Trichoderma atroviride estExt_Genewise1Plus.C_150343 N 0.704
estExt_Genewise1.C_sca_180152 Lottia gigantea estExt_Genewise1.C_sca_180152 N 0.817
estExt_Genewise1.C_5160046 Capitella teleta estExt_Genewise1.C_5160046 N 0.761
estExt_Genewise1.C_10147 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10147 N 0.704
estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 Nectria haematococca estExt_fgenesh1_kg.C_sca_10_chr8_2_00014 N 0.704
fgeneshMC_pm.5_#_40 Mucor circinelloides fgeneshMC_pm.5_#_40 N 0.732
GID1.0044779 Dictyostelium purpureum GID1.0044779 N 0.704
EAT82863.2 Phaeosphaeria nodorum EAT82863.2 N 0.704
GRMZM2G034804 Zea mays GRMZM2G034804 N 0.761
mgf009822m Mimulus guttatus mgf009822m N 0.704
gw.93.114.1 Branchiostoma floridae gw.93.114.1 N 0.845
gw.81.90.1 Branchiostoma floridae gw.81.90.1 N 0.845
gw1.29.143.1 Phycomyces blakesleeanus gw1.29.143.1 N 0.746
Glyma13g37030.1 Glycine max Glyma13g37030.1 N 0.746
Glyma12g33400.1 Glycine max Glyma12g33400.1 N 0.732
estExt_fgenesh1_kg.C_1730002 Daphnia pulex estExt_fgenesh1_kg.C_1730002 N 0.746
ENSSTOG00000001584 Spermophilus tridecemlineatus ENSSTOG00000001584 N 0.986
NCBP2L Canis familiaris ENSCAFG00000017990 N 0.746
NCBP2_AEDAE Aedes aegypti AAEL006135 N 0.817
nasonia_NCBI_hmm1532803 Nasonia vitripennis nasonia_NCBI_hmm1532803 N 0.901
nasonia_NCBI_hmm134534 Nasonia vitripennis nasonia_NCBI_hmm134534 N 0.859
DGIL_AUG5s15103g4t1 Acyrtosiphon pisum DGIL_AUG5s15103g4t1 N 0.761
DGIL_AUG5s12516g4t1 Acyrtosiphon pisum DGIL_AUG5s12516g4t1 N 0.789
amel4_ncbi_hmm3188 Apis mellifera amel4_ncbi_hmm3188 N 0.887
PK11911.1 Cannabis sativa PK11911.1 N 0.732
WUBG_16568 Wuchereria bancrofti WUBG_16568 N 0.817
NCBP2_ANOGA Anopheles gambiae AGAP002547 N 0.845
CBP20 Arabidopsis thaliana AT5G44200-TAIR-G N 0.718
NCBP2 Canis familiaris ENSCAFG00000013100 N 1.000
NCBP2_BOVIN Bos taurus ENSBTAG00000008873 N 1.000
ENSACAG00000015128 Anolis carolinensis ENSACAG00000015128 N 0.817
ncbp2 Dictyostelium discoideum DDB_G0287197 N 0.704
NCBP2_CULQU Culex quinquefasciatus CPIJ003555 N 0.803
NFIA_084190 Neosartorya fischeri CADNFIAG00008064 N 0.704
AFUA_2G08570 Aspergillus fumigatus CADAFUAG00004718 N 0.704
BRADI3G48560 Brachypodium distachyon BRADI3G48560 N 0.746
TESG_01120 Trichophyton tonsurans TESG_01120 N 0.704
TERG_03424 Trichophyton rubrum TERG_03424 N 0.704
TEQG_01953 Trichophyton equinum TEQG_01953 N 0.704
GLRG_00177 Colletotrichum graminicola GLRG_00177 N 0.704
FVEG_07036 Fusarium verticillioides FVEG_07036 N 0.704
CPSG_08054 Coccidioides posadasii CPSG_08054 N 0.704
CpipJ_CPIJ003555 Culex pipiens CpipJ_CPIJ003555 N 0.803
CIMG_00837 Coccidioides immitis CIMG_00837 N 0.704
Bm1_02935 Brugia malayi Bm1_02935 N 0.803
BDBG_08091 Blastomyces dermatitidis BDBG_08091 N 0.704
BC1G_04395 Botrytis cinerea BC1G_04395 N 0.718
HCAG_07341 Histoplasma capsulatum HCAG_07341 N 0.704
LOAG_03270 Loa loa LOAG_03270 N 0.817
SS1G_13629 Sclerotinia sclerotiorum SS1G_13629 N 0.718
SPPG_00516 Spizellomyces punctatus SPPG_00516 N 0.775
SNOG_09598 Stagonospora nodorum SNOG_09598 N 0.704
PTRG_00402 Pyrenophora tritici repentis PTRG_00402 N 0.704
PABG_07236 Paracoccidioides brasiliensis PABG_07236 N 0.704
MGYG_02166 Microsporum gypseum MGYG_02166 N 0.704
MGG_06296 Magnaporthe oryzae MGG_06296 N 0.704
MCYG_04468 Microsporum canis MCYG_04468 N 0.704
AMAG_02834 Allomyces macrogynus AMAG_02834 N 0.718
NCBP2L Sus scrofa ENSSSCG00000012562 N 0.761
ENSOCUG00000014372 Oryctolagus cuniculus ENSOCUG00000014372 N 0.972
NCBP2 Oryctolagus cuniculus ENSOCUG00000006738 N 0.986
Ncbp2 Mus musculus ENSMUSG00000022774 N 1.000
LOC100020122 Monodelphis domestica ENSMODG00000024608 N 0.944
XM_001367531.1 Monodelphis domestica ENSMODG00000024607 N 0.944
XM_001371285.1 Monodelphis domestica ENSMODG00000023276 N 0.972
XM_001373408.1 Monodelphis domestica ENSMODG00000015908 N 0.944
NCBP2 Macaca mulatta ENSMMUG00000007825 N 1.000
NCBP2 Otolemur garnettii ENSOGAG00000005009 N 1.000
ENSOPRG00000007634 Ochotona princeps ENSOPRG00000007634 N 0.972
ENSSSCG00000011840 Sus scrofa ENSSSCG00000011840 N 1.000
ENSSSCG00000011835 Sus scrofa ENSSSCG00000011835 N 1.000
NCBP2 Sorex araneus ENSSARG00000014294 N 0.887
NCBP2 Pteropus vampyrus ENSPVAG00000017273 N 0.986
NCBP2 Pan troglodytes ENSPTRG00000015789 N 1.000
ENSPPYG00000014449 Pongo pygmaeus ENSPPYG00000014449 N 1.000
NCBP2 Procavia capensis ENSPCAG00000003219 N 0.958
NCBP2 Oryzias latipes ENSORLG00000011235 N 0.831
NCBP2 Myotis lucifugus ENSMLUG00000017500 N 1.000
NCBP2L Microcebus murinus ENSMICG00000016081 N 0.704
NCBP2 Microcebus murinus ENSMICG00000003162 N 1.000
NCBP2 Equus caballus ENSECAG00000016153 N 1.000
NCBP2L Equus caballus ENSECAG00000003478 N 0.732
ncbp2 Danio rerio ENSDARG00000014898 N 0.845
ENSCSAVG00000005823 Ciona savignyi ENSCSAVG00000005823 N 0.761
NCBP2 Cavia porcellus ENSCPOG00000002976 N 0.972
LOC100404338 Callithrix jacchus ENSCJAG00000013735 N 1.000
ENSCING00000016926 Ciona intestinalis ENSCING00000016926 N 0.789
ENSCING00000003079 Ciona intestinalis ENSCING00000003079 N 0.789
NCBP2 Homo sapiens ENSG00000114503 N 1.000
NCBP2 Gasterosteus aculeatus ENSGACG00000006238 N 0.803
ENSMGAG00000006728 Meleagris gallopavo ENSMGAG00000006728 N 0.930
ENSMGAG00000002257 Meleagris gallopavo ENSMGAG00000002257 N 0.845
ENSMEUG00000008126 Macropus eugenii ENSMEUG00000008126 N 0.972
ENSMEUG00000004730 Macropus eugenii ENSMEUG00000004730 N 0.972
NCBP2L Loxodonta africana ENSLAFG00000027581 N 0.817
NCBP2 Loxodonta africana ENSLAFG00000006372 N 0.986
NCBP2 Gallus gallus ENSGALG00000006843 N 0.930
NCBP2_CHICK Gallus gallus ENSGALG00000005753 N 0.845
ENSCHOG00000005967 Choloepus hoffmanni ENSCHOG00000005967 N 0.986