79994 (Helobdella robusta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 79994 T48875_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
79994 RRM 35 102
79994 RRM 143 204

Links

Other RRM family RBPs
Other Helobdella robusta RBPs

128 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
orb2 Drosophila melanogaster FBgn0262573 D 0.741
CPEB4 Homo sapiens ENSG00000113742 D 0.721
CPEB2 Homo sapiens ENSG00000137449 D 0.733
CPEB4 Sus scrofa ENSSSCG00000016981 I 0.000
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.707
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.733
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.721
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.721
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.707
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.721
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.707
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.733
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.000
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.707
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.726
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.707
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.707
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.000
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.707
CPEB4 Sorex araneus ENSSARG00000013389 I 0.707
CPEB2 Sorex araneus ENSSARG00000010559 I 0.000
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.700
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.726
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.721
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.000
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.707
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.733
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.721
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.707
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.733
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.721
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.727
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.711
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.721
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.707
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.707
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.721
CPEB3 Sorex araneus ENSSARG00000001994 I 0.702
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.726
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.721
111676 Helobdella robusta 111676 I 0.000
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.719
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.748
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.000
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.733
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.722
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.728
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.739
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.756
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.707
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.733
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.721
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.726
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.000
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.726
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.731
PHUM335520 Pediculus humanus PHUM335520 I 0.763
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.733
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.000
CPEB3 Vicugna pacos ENSVPAG00000002144 I 0.000
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.000
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.000
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.707
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.000
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.741
GF10140 Drosophila ananassae FBgn0087181 I 0.741
GG15051 Drosophila erecta FBgn0107305 I 0.741
GH16131 Drosophila grimshawi FBgn0123602 I 0.741
GI12400 Drosophila mojavensis FBgn0135157 I 0.741
GL20808 Drosophila persimilis FBgn0158403 I 0.741
GJ12289 Drosophila virilis FBgn0199538 I 0.741
GK17460 Drosophila willistoni FBgn0219459 I 0.741
ISCW010113 Ixodes scapularis ISCW010113 I 0.763
ADH10187 Xenopus laevis ADH10187 I 0.721
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.741
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.721
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.733
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.721
CPEB2 Danio rerio ENSDARG00000052604 I 0.000
cpeb3 Danio rerio ENSDARG00000060103 I 0.000
CPEB4 Danio rerio ENSDARG00000060495 I 0.707
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.733
CPEB3 Equus caballus ENSECAG00000000077 I 0.702
CPEB2 Equus caballus ENSECAG00000008722 I 0.733
LOC100058918 Equus caballus ENSECAG00000016921 I 0.721
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.721
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.707
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.000
CPEB3 Homo sapiens ENSG00000107864 I 0.707
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.000
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.726
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.733
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.707
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.748
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.723
AAEL012065 Aedes aegypti AAEL012065 I 0.000
AGAP002296 Anopheles gambiae AGAP002296 I 0.752
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.707
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.733
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.721
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.721
CPEB3 Bos taurus ENSBTAG00000015450 I 0.707
CPEB2 Bos taurus ENSBTAG00000019847 I 0.733
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.707
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.733
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.716
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.702
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.733
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.754
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.700
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.707
CPEB3 Gallus gallus ENSGALG00000006912 I 0.707
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.714
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.733
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.721
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.707
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.721
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.707
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.733
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.733
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.711
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.702
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.733
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.721
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.707
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.721
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.733
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.721
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.707
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.733
CPEB4 Gallus gallus ENSGALG00000014074 I 0.711
CPEB2 Gallus gallus ENSGALG00000014516 I 0.733
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.733
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.721
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.707
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.733
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.721
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.707
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.733
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.707
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.711
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.733
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.707
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.707
CPEB3 Myotis lucifugus ENSMLUG00000009474 I 0.000
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.721
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.000
69117 Helobdella robusta 69117 N 0.000