CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Ame_R005385
(
Ailuropoda melanoleuca
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Ame_R005385
T55529_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
NCL
M245_0.6
Homo sapiens
CCGAAAKCCCGAAGYAGG
SELEX
Cook et al.(2011)
1004_8676391
0.974
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ame_R005385
RRM
272
340
LFVGNLNFSKSAPELKTGISDIFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKALELTGLKVFGNEIK
Ame_R005385
RRM
358
423
LLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSIS
Ame_R005385
RRM
451
517
LVLSNLSYNATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR
Ame_R005385
RRM
537
604
LFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT
Links
Other
RRM
family RBPs
Other
Ailuropoda melanoleuca
RBPs
37 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSPPYG00000013004
Pongo pygmaeus
ENSPPYG00000013004
N
0.000
zc3h15
Xenopus tropicalis
ENSXETG00000013336
N
0.000
F27D4.4
Caenorhabditis elegans
F27D4.4
N
0.000
XM_002883888.1
Arabidopsis lyrata
fgenesh2_kg.3__3143__AT2G20280.1
N
0.000
GSVIVG00016357001
Vitis vinifera
GSVIVG00016357001
N
0.000
LOC_Os01g61830
Oryza sativa
LOC_Os01g61830
N
0.000
PHUM521160
Pediculus humanus
PHUM521160
N
0.000
POPTR_0006s13510
Populus trichocarpa
POPTR_0006s13510
N
0.000
B9HM02_POPTR
Populus trichocarpa
POPTR_0008s04540
N
0.000
B9MT73_POPTR
Populus trichocarpa
POPTR_0308s00200
N
0.000
SB03G039020
Sorghum bicolor
Sb03g039020
N
0.000
29805.m001499
Ricinus communis
29805.m001499
N
0.000
ZC3H15
Vicugna pacos
ENSVPAG00000006980
N
0.000
ZC3H15
Tursiops truncatus
ENSTTRG00000012425
N
0.000
ZC3H15
Pan troglodytes
ENSPTRG00000012717
N
0.000
ZC3H15
Pteropus vampyrus
ENSPVAG00000004828
N
0.000
Zc3h15
Rattus norvegicus
ENSRNOG00000005256
N
0.000
ZC3H15
Sorex araneus
ENSSARG00000012071
N
0.000
ZC3H15
Sus scrofa
ENSSSCG00000016026
N
0.000
ZC3H15
Spermophilus tridecemlineatus
ENSSTOG00000006873
N
0.000
ZC3H15
Tupaia belangeri
ENSTBEG00000015530
N
0.000
ZC3H15
Taeniopygia guttata
ENSTGUG00000011131
N
0.000
ZC3H15
Tetraodon nigroviridis
ENSTNIG00000009860
N
0.000
ZC3H15
Takifugu rubripes
ENSTRUG00000004988
N
0.000
ZC3H15
Tarsius syrichta
ENSTSYG00000011019
N
0.000
72073
Helobdella robusta
72073
N
0.000
Aqu1.222312
Amphimedon queenslandica
Aqu1.222312
N
0.000
cassava28857.valid.m1
Manihot esculenta
cassava28857.valid.m1
N
0.000
EFA82915.1
Polysphondylium pallidum
EFA82915.1
N
0.000
BGIBMGA011604
Bombyx mori
BGIBMGA011604
N
0.000
Ame_R017931
Ailuropoda melanoleuca
Ame_R017931
N
0.000
chr5.LjT08O17.30.nd
Lotus japonicus
chr5.LjT08O17.30.nd
N
0.000
MDP0000161236
Malus x domestica
MDP0000161236
N
0.000
Minc08580
Meloidogyne incognita
Minc08580
N
0.000
PDK_20s1366191g001
Phoenix dactylifera
PDK_20s1366191g001
N
0.000
ppa007639m
Prunus persica
ppa007639m
N
0.000
ppa007903m
Prunus persica
ppa007903m
N
0.000
AAH77826
Xenopus laevis
AAH77826
N
0.000
BAD89267
Xenopus laevis
BAD89267
N
0.000
GRMZM2G032258
Zea mays
GRMZM2G032258
N
0.000
PASA_GEN_1200032
Daphnia pulex
PASA_GEN_1200032
N
0.000
cassava28858.valid.m1
Manihot esculenta
cassava28858.valid.m1
N
0.000
cassava3130.m1
Manihot esculenta
cassava3130.m1
N
0.000
e_gw1.3.744.1
Selaginella moellendorfii
e_gw1.3.744.1
N
0.000
e_gw.53.202.1
Nematostella vectensis
e_gw.53.202.1
N
0.000
estExt_fgenesh1_pm.C_chr_90145
Mycosphaerella graminicola
estExt_fgenesh1_pm.C_chr_90145
N
0.000
estExt_Genewise1Plus.C_sca_2280007
Lottia gigantea
estExt_Genewise1Plus.C_sca_2280007
N
0.000
fgeneshTA2_pg.C_scaffold_15000146
Trichoplax adhaerens
fgeneshTA2_pg.C_scaffold_15000146
N
0.000
Glyma03g33420.1
Glycine max
Glyma03g33420.1
N
0.000
Glyma10g05550.1
Glycine max
Glyma10g05550.1
N
0.000
Glyma19g36150.1
Glycine max
Glyma19g36150.1
N
0.000
gw1.233.15.1
Physcomitrella patens
gw1.233.15.1
N
0.000
Q6DD06
Xenopus laevis
Q6DD06
N
0.000
BC1G_06447
Botrytis cinerea
BC1G_06447
N
0.000
AT2G20280
Arabidopsis thaliana
AT2G20280-TAIR-G
N
0.000
BGIOSIBCE004176
Oryza indica
BGIOSIBCE004176
N
0.000
BRADI2G54220
Brachypodium distachyon
BRADI2G54220
N
0.000
AFUA_5G13930
Aspergillus fumigatus
CADAFUAG00006431
N
0.000
ANIA_06922
Aspergillus nidulans
CADANIAG00007728
N
0.000
NFIA_073040
Neosartorya fischeri
CADNFIAG00007899
N
0.000
CBG00292
Caenorhabditis briggsae
CBG00292
N
0.000
CBN03898
Caenorhabditis brenneri
CBN03898
N
0.000
CBN11546
Caenorhabditis brenneri
CBN11546
N
0.000
CJA17052
Caenorhabditis japonica
CJA17052
N
0.000
CRE20408
Caenorhabditis remanei
CRE20408
N
0.000
nasonia_NCBI_hmm1144383
Nasonia vitripennis
nasonia_NCBI_hmm1144383
N
0.000
DGIL_AUG5s16g7t1
Acyrtosiphon pisum
DGIL_AUG5s16g7t1
N
0.000
Bm1_13920
Brugia malayi
Bm1_13920
N
0.000
CLUG_02796
Candida lusitaniae
CLUG_02796
N
0.000
CPAG_03559
Candida parapsilosis
CPAG_03559
N
0.000
CTRG_02162
Candida tropicalis
CTRG_02162
N
0.000
DEHA0A09449g
Debaryomyces hansenii
DEHA0A09449g
N
0.000
LOAG_00784
Loa loa
LOAG_00784
N
0.000
PGUG_02031
Candida guilliermondii
PGUG_02031
N
0.000
SS1G_13466
Sclerotinia sclerotiorum
SS1G_13466
N
0.000
WUBG_13399
Wuchereria bancrofti
WUBG_13399
N
0.000
PK12342.1
Cannabis sativa
PK12342.1
N
0.000
amel4_ncbi_hmm11607
Apis mellifera
amel4_ncbi_hmm11607
N
0.000
ZC3H15
Anolis carolinensis
ENSACAG00000001916
N
0.000
ZC3HF_BOVIN
Bos taurus
ENSBTAG00000021762
N
0.000
ZC3H15
Canis familiaris
ENSCAFG00000014494
N
0.000
ZC3H15
Meleagris gallopavo
ENSMGAG00000004447
N
0.000
ZC3H15
Microcebus murinus
ENSMICG00000014245
N
0.000
ZC3H15
Myotis lucifugus
ENSMLUG00000007741
N
0.000
ZC3H15
Macaca mulatta
ENSMMUG00000017248
N
0.000
ITGAV
Monodelphis domestica
ENSMODG00000010653
N
0.000
Zc3h15
Mus musculus
ENSMUSG00000027091
N
0.000
ZC3H15
Ornithorhynchus anatinus
ENSOANG00000015742
N
0.000
ENSOCUG00000011903
Oryctolagus cuniculus
ENSOCUG00000011903
N
0.000
ZC3H15
Otolemur garnettii
ENSOGAG00000002182
N
0.000
ENSOPRG00000015790
Ochotona princeps
ENSOPRG00000015790
N
0.000
ZC3H15
Oryzias latipes
ENSORLG00000018606
N
0.000
ENSLAFG00000001563
Loxodonta africana
ENSLAFG00000001563
N
0.000
ZC3H15
Gorilla gorilla
ENSGGOG00000000073
N
0.000
ZC3H15
Choloepus hoffmanni
ENSCHOG00000011958
N
0.000
ZC3H15
Callithrix jacchus
ENSCJAG00000005931
N
0.000
ENSCPOG00000012965
Cavia porcellus
ENSCPOG00000012965
N
0.000
zc3h15
Danio rerio
ENSDARG00000015889
N
0.000
Zc3h15
Dipodomys ordii
ENSDORG00000011664
N
0.000
LOC100068634
Equus caballus
ENSECAG00000017149
N
0.000
ENSETEG00000015556
Echinops telfairi
ENSETEG00000015556
N
0.000
ZC3H15
Felis catus
ENSFCAG00000008213
N
0.000
ZC3H15
Homo sapiens
ENSG00000065548
N
0.000
ZC3H15
Gasterosteus aculeatus
ENSGACG00000011648
N
0.000
ZC3HF_CHICK
Gallus gallus
ENSGALG00000002670
N
0.000
ZC3H15
Procavia capensis
ENSPCAG00000008499
N
0.000