MDP0000199885 (Malus x domestica)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 MDP0000199885 T62532_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000199885 YTH 585 662

Links

Other YTH family RBPs
Other Malus x domestica RBPs

66 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa018635m Prunus persica ppa018635m N 0.802
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.703
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.703
mgf017987m Mimulus guttatus mgf017987m N 0.758
mgf015583m Mimulus guttatus mgf015583m N 0.758
mgf014143m Mimulus guttatus mgf014143m N 0.758
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.769
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.725
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.736
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.747
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.714
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.747
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.780
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.780
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.703
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.747
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.714
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.758
ppa003664m Prunus persica ppa003664m N 0.714
PDK_20s1906441g001 Phoenix dactylifera PDK_20s1906441g001 N 0.841
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.741
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.780
MDP0000306387 Malus x domestica MDP0000306387 N 0.780
MDP0000299155 Malus x domestica MDP0000299155 N 0.769
MDP0000286471 Malus x domestica MDP0000286471 N 0.714
MDP0000231231 Malus x domestica MDP0000231231 N 0.714
MDP0000171737 Malus x domestica MDP0000171737 N 0.703
MDP0000132385 Malus x domestica MDP0000132385 N 0.780
LjT10H22.120.nd Lotus japonicus LjT10H22.120.nd N 0.872
LjSGA_011466.1 Lotus japonicus LjSGA_011466.1 N 0.807
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.758
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.703
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.703
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.703
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.703
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.703
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.791
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.725
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.714
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.747
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.758
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.714
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.714
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.724
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.725
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.714
PK23104.1 Cannabis sativa PK23104.1 N 0.725
PK17832.1 Cannabis sativa PK17832.1 N 0.703
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.714
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.758
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.703
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.714
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.714
cassava16277.m1 Manihot esculenta cassava16277.m1 N 0.705
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.703
30169.m006347 Ricinus communis 30169.m006347 N 0.720
29955.m001158 Ricinus communis 29955.m001158 N 0.714
29889.m003364 Ricinus communis 29889.m003364 N 0.758
SB03G031190 Sorghum bicolor Sb03g031190 N 0.703
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.703
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.747
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.747
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.703
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.703
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.714
PK02315.1 Cannabis sativa PK02315.1 N 0.758