LOC_Os04g51940 (Oryza sativa)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 LOC_Os04g51940 T62230_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os04g51940.1 YTH 371 461
LOC_Os04g51940.2 YTH 365 455

Links

Other YTH family RBPs
Other Oryza sativa RBPs

198 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.956
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.956
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.956
SB07G006330 Sorghum bicolor Sb07g006330 N 0.923
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.923
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.912
ppa002588m Prunus persica ppa002588m N 0.846
PK17832.1 Cannabis sativa PK17832.1 N 0.846
ppa002483m Prunus persica ppa002483m N 0.846
MDP0000405927 Malus x domestica MDP0000405927 N 0.846
SB07G024500 Sorghum bicolor Sb07g024500 N 0.846
MDP0000287088 Malus x domestica MDP0000287088 N 0.846
MDP0000617859 Malus x domestica MDP0000617859 N 0.846
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.835
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.835
MDP0000552419 Malus x domestica MDP0000552419 N 0.835
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.835
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.835
SB06G027960 Sorghum bicolor Sb06g027960 N 0.835
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.835
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.835
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.835
MDP0000248088 Malus x domestica MDP0000248088 N 0.835
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.835
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.835
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.835
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.835
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.835
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.835
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.835
ppa003664m Prunus persica ppa003664m N 0.824
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.824
29929.m004643 Ricinus communis 29929.m004643 N 0.824
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.824
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.824
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.824
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.824
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.824
mgf009938m Mimulus guttatus mgf009938m N 0.813
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.813
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.813
mgf013853m Mimulus guttatus mgf013853m N 0.813
PK01736.1 Cannabis sativa PK01736.1 N 0.802
PK02315.1 Cannabis sativa PK02315.1 N 0.802
MDP0000231231 Malus x domestica MDP0000231231 N 0.802
MDP0000171737 Malus x domestica MDP0000171737 N 0.802
ppa018635m Prunus persica ppa018635m N 0.802
MDP0000286471 Malus x domestica MDP0000286471 N 0.802
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.802
29955.m001158 Ricinus communis 29955.m001158 N 0.802
29889.m003364 Ricinus communis 29889.m003364 N 0.802
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.802
mgf019821m Mimulus guttatus mgf019821m N 0.802
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.802
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.802
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.802
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.802
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.791
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.791
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.791
MDP0000306387 Malus x domestica MDP0000306387 N 0.791
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.791
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.791
MDP0000132385 Malus x domestica MDP0000132385 N 0.791
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.791
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.791
PK23104.1 Cannabis sativa PK23104.1 N 0.791
mgf017987m Mimulus guttatus mgf017987m N 0.780
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.780
mgf014143m Mimulus guttatus mgf014143m N 0.780
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.780
mgf015583m Mimulus guttatus mgf015583m N 0.780
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.780
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.780
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.780
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.780
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.780
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.780
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.780
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.780
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.780
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.780
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.780
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.780
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.780
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.780
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.780
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.769
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.769
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.769
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.769
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.769
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.769
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.769
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.769
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.769
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.769
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.769
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.769
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.769
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.769
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.769
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.769
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.769
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.769
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.769
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.769
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.769
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.769
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.769
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.769
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.769
SB02G003990 Sorghum bicolor Sb02g003990 N 0.769
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.769
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.769
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.769
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.769
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.769
SB01G005500 Sorghum bicolor Sb01g005500 N 0.769
SB01G008170 Sorghum bicolor Sb01g008170 N 0.769
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.769
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.769
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.769
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.769
mgf013935m Mimulus guttatus mgf013935m N 0.769
mgf001716m Mimulus guttatus mgf001716m N 0.769
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.769
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.769
mgf014829m Mimulus guttatus mgf014829m N 0.769
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.769
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.758
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.758
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.758
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.758
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.758
PK23716.1 Cannabis sativa PK23716.1 N 0.758
SB03G031190 Sorghum bicolor Sb03g031190 N 0.758
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.758
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.758
29950.m001140 Ricinus communis 29950.m001140 N 0.758
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.758
GRMZM2G363789 Zea mays GRMZM2G363789 N 0.758
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.758
29890.m000285 Ricinus communis 29890.m000285 N 0.758
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.758
PK05579.1 Cannabis sativa PK05579.1 N 0.758
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.758
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.758
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.758
MDP0000488588 Malus x domestica MDP0000488588 N 0.758
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.758
MDP0000718677 Malus x domestica MDP0000718677 N 0.758
MDP0000124048 Malus x domestica MDP0000124048 N 0.758
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.758
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.758
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.758
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.758
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.747
mgf019846m Mimulus guttatus mgf019846m N 0.747
MDP0000129009 Malus x domestica MDP0000129009 N 0.747
MDP0000256033 Malus x domestica MDP0000256033 N 0.747
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.747
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.747
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.747
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.747
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.747
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.747
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.736
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.736
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.736
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.736
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.736
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.736
PK26094.1 Cannabis sativa PK26094.1 N 0.736
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.736
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.736
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.736
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.736
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.736
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.736
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.725
ppa002677m Prunus persica ppa002677m N 0.725
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.725
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.725
ECT9 Arabidopsis thaliana AT1G27960-TAIR-G N 0.725
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.714
ppa003557m Prunus persica ppa003557m N 0.714
MDP0000488248 Malus x domestica MDP0000488248 N 0.714
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.703
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.703
SB09G000580 Sorghum bicolor Sb09g000580 N 0.703
29765.m000746 Ricinus communis 29765.m000746 N 0.703
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.703
BRADI2G12380 Brachypodium distachyon BRADI2G12380 N 0.703
MDP0000199885 Malus x domestica MDP0000199885 N 0.703
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.703
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.703