B9N5D4_POPTR (Populus trichocarpa)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 POPTR_0014s00320 T62252_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0014s00320.1 YTH 459 549

Links

Other YTH family RBPs
Other Populus trichocarpa RBPs

194 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.978
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.978
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.967
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.967
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.967
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.956
29929.m004643 Ricinus communis 29929.m004643 N 0.956
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.956
PK17832.1 Cannabis sativa PK17832.1 N 0.945
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.945
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.945
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.945
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.945
MDP0000405927 Malus x domestica MDP0000405927 N 0.934
MDP0000287088 Malus x domestica MDP0000287088 N 0.934
MDP0000617859 Malus x domestica MDP0000617859 N 0.934
ppa002588m Prunus persica ppa002588m N 0.934
ppa002483m Prunus persica ppa002483m N 0.934
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.934
MDP0000248088 Malus x domestica MDP0000248088 N 0.923
MDP0000552419 Malus x domestica MDP0000552419 N 0.923
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.923
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.923
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.912
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.890
PK01736.1 Cannabis sativa PK01736.1 N 0.890
SB07G024500 Sorghum bicolor Sb07g024500 N 0.890
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.879
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.879
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.857
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.857
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.857
SB07G006330 Sorghum bicolor Sb07g006330 N 0.846
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.846
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.835
mgf019821m Mimulus guttatus mgf019821m N 0.835
29890.m000285 Ricinus communis 29890.m000285 N 0.835
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.835
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.835
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.824
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.813
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.813
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.813
SB06G027960 Sorghum bicolor Sb06g027960 N 0.813
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.813
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.813
ppa003664m Prunus persica ppa003664m N 0.813
MDP0000171737 Malus x domestica MDP0000171737 N 0.813
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.813
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.813
PK23104.1 Cannabis sativa PK23104.1 N 0.813
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.802
SB03G031190 Sorghum bicolor Sb03g031190 N 0.802
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.802
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.802
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.802
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.802
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.802
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.802
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.802
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.791
ppa018635m Prunus persica ppa018635m N 0.791
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.791
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.791
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.791
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.791
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.791
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.791
29955.m001158 Ricinus communis 29955.m001158 N 0.791
PK05579.1 Cannabis sativa PK05579.1 N 0.791
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.791
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.791
MDP0000286471 Malus x domestica MDP0000286471 N 0.780
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.780
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.780
MDP0000231231 Malus x domestica MDP0000231231 N 0.780
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.780
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.780
SB01G008170 Sorghum bicolor Sb01g008170 N 0.780
MDP0000306387 Malus x domestica MDP0000306387 N 0.780
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.780
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.780
ECT9 Arabidopsis thaliana AT1G27960-TAIR-G N 0.780
ppa002677m Prunus persica ppa002677m N 0.780
MDP0000132385 Malus x domestica MDP0000132385 N 0.780
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.769
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.769
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.769
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.769
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.769
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.769
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.769
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.769
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.769
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.769
29889.m003364 Ricinus communis 29889.m003364 N 0.769
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.758
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.758
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.758
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.758
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.758
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.758
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.758
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.758
mgf017987m Mimulus guttatus mgf017987m N 0.758
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.758
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.747
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.747
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.747
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.747
SB02G003990 Sorghum bicolor Sb02g003990 N 0.747
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.747
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.747
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.747
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.747
mgf014143m Mimulus guttatus mgf014143m N 0.747
mgf015583m Mimulus guttatus mgf015583m N 0.747
MDP0000189157 Malus x domestica MDP0000189157 N 0.747
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.736
PK26094.1 Cannabis sativa PK26094.1 N 0.736
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.736
mgf009938m Mimulus guttatus mgf009938m N 0.736
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.736
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.736
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.736
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.736
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.736
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.736
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.736
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.736
29950.m001140 Ricinus communis 29950.m001140 N 0.736
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.736
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.736
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.736
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.736
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.736
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.736
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.736
mgf013853m Mimulus guttatus mgf013853m N 0.736
mgf013935m Mimulus guttatus mgf013935m N 0.736
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.736
MDP0000124048 Malus x domestica MDP0000124048 N 0.736
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.736
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.736
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.736
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.736
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.736
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.725
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.725
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.725
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.725
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.725
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.725
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.725
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.725
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.725
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.725
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.725
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.725
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.725
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.725
MDP0000129009 Malus x domestica MDP0000129009 N 0.725
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.725
PK02315.1 Cannabis sativa PK02315.1 N 0.725
SB01G005500 Sorghum bicolor Sb01g005500 N 0.725
MDP0000488588 Malus x domestica MDP0000488588 N 0.725
29765.m000746 Ricinus communis 29765.m000746 N 0.725
MDP0000718677 Malus x domestica MDP0000718677 N 0.725
MDP0000256033 Malus x domestica MDP0000256033 N 0.725
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.714
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.714
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.714
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.714
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.714
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.714
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.714
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.714
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.714
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.714
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.714
ppa003557m Prunus persica ppa003557m N 0.714
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.714
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.703
mgf001716m Mimulus guttatus mgf001716m N 0.703
MDP0000199885 Malus x domestica MDP0000199885 N 0.703
MDP0000488248 Malus x domestica MDP0000488248 N 0.703
BGIOSIBCE028833 Oryza indica BGIOSIBCE028833 N 0.703
PK23716.1 Cannabis sativa PK23716.1 N 0.703
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.703
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.703
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.703
mgf014829m Mimulus guttatus mgf014829m N 0.703
mgf019846m Mimulus guttatus mgf019846m N 0.703
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.703