B9GMK5_POPTR (Populus trichocarpa)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 POPTR_0001s13870 T62242_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s13870.1 YTH 404 494

Links

Other YTH family RBPs
Other Populus trichocarpa RBPs

184 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.945
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.934
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.934
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.934
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.934
29929.m004643 Ricinus communis 29929.m004643 N 0.934
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.923
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.923
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.923
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.923
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.923
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.923
PK17832.1 Cannabis sativa PK17832.1 N 0.912
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.912
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.912
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.901
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.901
MDP0000617859 Malus x domestica MDP0000617859 N 0.890
ppa002483m Prunus persica ppa002483m N 0.890
MDP0000405927 Malus x domestica MDP0000405927 N 0.890
ppa002588m Prunus persica ppa002588m N 0.890
MDP0000287088 Malus x domestica MDP0000287088 N 0.890
MDP0000248088 Malus x domestica MDP0000248088 N 0.879
MDP0000552419 Malus x domestica MDP0000552419 N 0.879
PK01736.1 Cannabis sativa PK01736.1 N 0.868
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.857
SB07G024500 Sorghum bicolor Sb07g024500 N 0.857
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.846
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.846
29890.m000285 Ricinus communis 29890.m000285 N 0.824
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.824
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.824
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.824
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.824
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.813
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.813
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.813
MDP0000171737 Malus x domestica MDP0000171737 N 0.813
mgf019821m Mimulus guttatus mgf019821m N 0.813
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.813
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.813
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.813
SB07G006330 Sorghum bicolor Sb07g006330 N 0.813
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.802
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.802
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.802
ppa018635m Prunus persica ppa018635m N 0.802
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.802
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.802
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.802
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.802
SB03G031190 Sorghum bicolor Sb03g031190 N 0.802
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.802
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.802
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.802
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.802
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.802
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.791
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.791
MDP0000231231 Malus x domestica MDP0000231231 N 0.791
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.791
29955.m001158 Ricinus communis 29955.m001158 N 0.791
MDP0000286471 Malus x domestica MDP0000286471 N 0.791
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.791
MDP0000306387 Malus x domestica MDP0000306387 N 0.791
MDP0000132385 Malus x domestica MDP0000132385 N 0.791
ppa003664m Prunus persica ppa003664m N 0.791
PK23104.1 Cannabis sativa PK23104.1 N 0.791
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.780
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.780
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.780
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.780
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.780
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.780
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.780
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.780
SB06G027960 Sorghum bicolor Sb06g027960 N 0.780
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.780
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.780
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.780
PK05579.1 Cannabis sativa PK05579.1 N 0.780
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.780
29889.m003364 Ricinus communis 29889.m003364 N 0.780
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.769
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.769
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.769
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.769
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.769
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.769
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.769
ppa002677m Prunus persica ppa002677m N 0.769
mgf017987m Mimulus guttatus mgf017987m N 0.769
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.769
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.769
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.758
ECT9 Arabidopsis thaliana AT1G27960-TAIR-G N 0.758
mgf015583m Mimulus guttatus mgf015583m N 0.758
mgf014143m Mimulus guttatus mgf014143m N 0.758
SB01G008170 Sorghum bicolor Sb01g008170 N 0.758
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.758
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.758
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.758
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.758
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.758
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.747
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.747
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.747
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.747
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.747
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.747
PK02315.1 Cannabis sativa PK02315.1 N 0.736
PK26094.1 Cannabis sativa PK26094.1 N 0.736
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.736
MDP0000189157 Malus x domestica MDP0000189157 N 0.736
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.736
SB02G003990 Sorghum bicolor Sb02g003990 N 0.736
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.736
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.725
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.725
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.725
29765.m000746 Ricinus communis 29765.m000746 N 0.725
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.725
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.725
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.725
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.725
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.725
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.725
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.725
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.725
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.725
mgf009938m Mimulus guttatus mgf009938m N 0.725
mgf014829m Mimulus guttatus mgf014829m N 0.725
mgf013935m Mimulus guttatus mgf013935m N 0.725
mgf013853m Mimulus guttatus mgf013853m N 0.725
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.725
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.725
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.725
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.725
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.725
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.725
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.725
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.725
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.725
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.725
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.725
mgf001716m Mimulus guttatus mgf001716m N 0.725
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.725
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.725
MDP0000256033 Malus x domestica MDP0000256033 N 0.725
MDP0000124048 Malus x domestica MDP0000124048 N 0.725
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.725
MDP0000488588 Malus x domestica MDP0000488588 N 0.725
29950.m001140 Ricinus communis 29950.m001140 N 0.725
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.714
MDP0000199885 Malus x domestica MDP0000199885 N 0.714
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.714
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.714
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.714
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.714
MDP0000129009 Malus x domestica MDP0000129009 N 0.714
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.714
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.714
MDP0000718677 Malus x domestica MDP0000718677 N 0.714
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.714
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.714
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.714
ppa003557m Prunus persica ppa003557m N 0.714
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.714
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.714
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.714
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.714
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.703
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.703
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.703
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.703
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.703
MDP0000488248 Malus x domestica MDP0000488248 N 0.703
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.703
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.703
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.703
SB01G005500 Sorghum bicolor Sb01g005500 N 0.703
mgf019846m Mimulus guttatus mgf019846m N 0.703
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.703
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.703