chr3.CM0292.380.nc (Lotus japonicus)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 chr3.CM0292.380.nc T62483_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
chr3.CM0292.380.nc YTH 376 466

Links

Other YTH family RBPs
Other Lotus japonicus RBPs

167 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.967
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.945
PK17832.1 Cannabis sativa PK17832.1 N 0.923
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.923
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.923
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.923
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.923
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.923
ppa002588m Prunus persica ppa002588m N 0.912
ppa002483m Prunus persica ppa002483m N 0.912
MDP0000405927 Malus x domestica MDP0000405927 N 0.912
MDP0000617859 Malus x domestica MDP0000617859 N 0.912
MDP0000287088 Malus x domestica MDP0000287088 N 0.912
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.912
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.912
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.912
MDP0000552419 Malus x domestica MDP0000552419 N 0.901
MDP0000248088 Malus x domestica MDP0000248088 N 0.901
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.890
29929.m004643 Ricinus communis 29929.m004643 N 0.890
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.890
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.879
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.879
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.846
PK01736.1 Cannabis sativa PK01736.1 N 0.846
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.824
MDP0000171737 Malus x domestica MDP0000171737 N 0.824
SB07G024500 Sorghum bicolor Sb07g024500 N 0.824
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.813
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.813
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.813
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.813
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.813
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.813
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.813
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.813
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.813
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.813
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.813
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.802
PK23104.1 Cannabis sativa PK23104.1 N 0.802
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.802
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.802
29890.m000285 Ricinus communis 29890.m000285 N 0.802
SB07G006330 Sorghum bicolor Sb07g006330 N 0.802
ppa003664m Prunus persica ppa003664m N 0.802
SB03G031190 Sorghum bicolor Sb03g031190 N 0.802
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.802
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.802
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.791
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.791
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.791
29955.m001158 Ricinus communis 29955.m001158 N 0.791
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.791
mgf019821m Mimulus guttatus mgf019821m N 0.791
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.791
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.791
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.791
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.791
ppa018635m Prunus persica ppa018635m N 0.791
MDP0000231231 Malus x domestica MDP0000231231 N 0.791
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.791
MDP0000286471 Malus x domestica MDP0000286471 N 0.791
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.780
MDP0000132385 Malus x domestica MDP0000132385 N 0.780
PK05579.1 Cannabis sativa PK05579.1 N 0.780
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.780
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.780
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.780
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.780
MDP0000306387 Malus x domestica MDP0000306387 N 0.780
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.780
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.780
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.769
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.769
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.769
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.769
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.769
ppa002677m Prunus persica ppa002677m N 0.769
29889.m003364 Ricinus communis 29889.m003364 N 0.769
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.769
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.769
SB06G027960 Sorghum bicolor Sb06g027960 N 0.769
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.769
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.769
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.758
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.758
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.758
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.758
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.758
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.758
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.758
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.758
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.758
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.758
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.758
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.758
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.758
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.747
mgf015583m Mimulus guttatus mgf015583m N 0.747
mgf017987m Mimulus guttatus mgf017987m N 0.747
mgf014143m Mimulus guttatus mgf014143m N 0.747
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.747
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.747
SB01G008170 Sorghum bicolor Sb01g008170 N 0.747
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.747
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.747
mgf014829m Mimulus guttatus mgf014829m N 0.736
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.736
MDP0000189157 Malus x domestica MDP0000189157 N 0.736
mgf001716m Mimulus guttatus mgf001716m N 0.736
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.736
PK02315.1 Cannabis sativa PK02315.1 N 0.736
PK26094.1 Cannabis sativa PK26094.1 N 0.725
MDP0000256033 Malus x domestica MDP0000256033 N 0.725
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.725
ECT9 Arabidopsis thaliana AT1G27960-TAIR-G N 0.725
mgf013853m Mimulus guttatus mgf013853m N 0.725
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.725
mgf009938m Mimulus guttatus mgf009938m N 0.725
mgf013935m Mimulus guttatus mgf013935m N 0.714
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.714
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.714
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.714
MDP0000124048 Malus x domestica MDP0000124048 N 0.714
29765.m000746 Ricinus communis 29765.m000746 N 0.714
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.714
MDP0000488588 Malus x domestica MDP0000488588 N 0.714
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.714
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.714
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.714
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.714
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.714
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.714
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.714
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.714
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.714
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.714
ppa003557m Prunus persica ppa003557m N 0.714
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.714
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.714
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.714
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.714
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.714
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.714
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.714
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.714
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.714
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.714
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.714
mgf019846m Mimulus guttatus mgf019846m N 0.703
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.703
MDP0000199885 Malus x domestica MDP0000199885 N 0.703
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.703
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.703
SB02G003990 Sorghum bicolor Sb02g003990 N 0.703
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.703
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.703
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.703
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.703
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.703
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.703
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.703
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.703
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.703
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.703
MDP0000488248 Malus x domestica MDP0000488248 N 0.703