PK17832.1 (Cannabis sativa)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 PK17832.1 T61909_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK17832.1 YTH 481 571

Links

Other YTH family RBPs
Other Cannabis sativa RBPs

192 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.956
ppa002588m Prunus persica ppa002588m N 0.956
ppa002483m Prunus persica ppa002483m N 0.956
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.956
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.956
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.945
29929.m004643 Ricinus communis 29929.m004643 N 0.945
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.945
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.945
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.945
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.945
MDP0000405927 Malus x domestica MDP0000405927 N 0.934
MDP0000287088 Malus x domestica MDP0000287088 N 0.934
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.934
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.934
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.934
MDP0000617859 Malus x domestica MDP0000617859 N 0.934
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.923
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.923
MDP0000248088 Malus x domestica MDP0000248088 N 0.923
MDP0000552419 Malus x domestica MDP0000552419 N 0.923
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.912
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.901
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.879
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.868
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.868
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.868
PK01736.1 Cannabis sativa PK01736.1 N 0.868
SB07G024500 Sorghum bicolor Sb07g024500 N 0.868
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.857
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.857
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.846
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.846
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.835
SB07G006330 Sorghum bicolor Sb07g006330 N 0.835
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.835
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.824
29890.m000285 Ricinus communis 29890.m000285 N 0.824
mgf019821m Mimulus guttatus mgf019821m N 0.813
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.813
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.813
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.802
ppa003664m Prunus persica ppa003664m N 0.802
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.802
ppa018635m Prunus persica ppa018635m N 0.802
PK23104.1 Cannabis sativa PK23104.1 N 0.802
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.802
PK05579.1 Cannabis sativa PK05579.1 N 0.802
MDP0000171737 Malus x domestica MDP0000171737 N 0.802
SB06G027960 Sorghum bicolor Sb06g027960 N 0.802
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.791
MDP0000132385 Malus x domestica MDP0000132385 N 0.791
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.791
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.791
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.791
MDP0000306387 Malus x domestica MDP0000306387 N 0.791
ppa002677m Prunus persica ppa002677m N 0.791
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.791
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.791
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.791
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.791
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.791
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.791
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.791
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.780
29955.m001158 Ricinus communis 29955.m001158 N 0.780
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.780
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.780
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.780
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.780
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.780
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.780
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.780
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.780
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.780
SB01G008170 Sorghum bicolor Sb01g008170 N 0.780
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.780
SB03G031190 Sorghum bicolor Sb03g031190 N 0.780
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.769
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.769
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.769
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.769
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.769
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.769
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.769
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.769
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.769
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.769
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.769
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.769
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.769
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.769
29889.m003364 Ricinus communis 29889.m003364 N 0.769
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.769
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.769
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.769
MDP0000231231 Malus x domestica MDP0000231231 N 0.769
ECT9 Arabidopsis thaliana AT1G27960-TAIR-G N 0.769
MDP0000286471 Malus x domestica MDP0000286471 N 0.769
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.758
mgf017987m Mimulus guttatus mgf017987m N 0.758
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.758
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.758
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.758
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.758
MDP0000189157 Malus x domestica MDP0000189157 N 0.758
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.758
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.758
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.747
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.747
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.747
mgf014143m Mimulus guttatus mgf014143m N 0.747
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.747
mgf013935m Mimulus guttatus mgf013935m N 0.747
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.747
mgf015583m Mimulus guttatus mgf015583m N 0.747
mgf013853m Mimulus guttatus mgf013853m N 0.736
mgf009938m Mimulus guttatus mgf009938m N 0.736
PK02315.1 Cannabis sativa PK02315.1 N 0.736
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.736
MDP0000124048 Malus x domestica MDP0000124048 N 0.736
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.736
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.736
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.736
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.736
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.736
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.736
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.736
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.736
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.736
29950.m001140 Ricinus communis 29950.m001140 N 0.736
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.736
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.736
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.736
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.736
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.736
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.736
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.736
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.736
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.736
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.736
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.736
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.736
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.736
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.736
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.736
MDP0000488588 Malus x domestica MDP0000488588 N 0.725
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.725
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.725
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.725
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.725
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.725
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.725
SB02G003990 Sorghum bicolor Sb02g003990 N 0.725
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.725
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.725
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.725
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.725
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.725
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.725
MDP0000256033 Malus x domestica MDP0000256033 N 0.714
PK26094.1 Cannabis sativa PK26094.1 N 0.714
29765.m000746 Ricinus communis 29765.m000746 N 0.714
PK23716.1 Cannabis sativa PK23716.1 N 0.714
MDP0000718677 Malus x domestica MDP0000718677 N 0.714
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.714
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.714
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.714
MDP0000129009 Malus x domestica MDP0000129009 N 0.714
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.714
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.714
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.714
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.703
ppa003557m Prunus persica ppa003557m N 0.703
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.703
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.703
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.703
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.703
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.703
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.703
mgf001716m Mimulus guttatus mgf001716m N 0.703
mgf014829m Mimulus guttatus mgf014829m N 0.703
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.703
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.703
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.703
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.703
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.703
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.703
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.703
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.703
MDP0000199885 Malus x domestica MDP0000199885 N 0.703
SB01G005500 Sorghum bicolor Sb01g005500 N 0.703