Glyma07g37980.1 (Glycine max)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Glyma07g37980.1 T05413_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma07g37980.1 CCCH ZF 48 74
Glyma07g37980.1 CCCH ZF 95 120
Glyma07g37980.1 CCCH ZF 141 166
Glyma07g37980.1 CCCH ZF 306 332
Glyma07g37980.1 CCCH ZF 352 378

Links

Other CCCH ZF family RBPs
Other Glycine max RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29726.m004014 Ricinus communis 29726.m004014 N 0.873
AT2G47850 Arabidopsis thaliana AT2G47850-TAIR-G N 0.709
AT3G06410 Arabidopsis thaliana AT3G06410-TAIR-G N 0.763
AT5G18550 Arabidopsis thaliana AT5G18550-TAIR-G N 0.756
BRADI2G09340 Brachypodium distachyon BRADI2G09340 N 0.711
BRADI2G09350 Brachypodium distachyon BRADI2G09350 N 0.748
cassava19141.valid.m1 Manihot esculenta cassava19141.valid.m1 N 0.896
cassava29576.valid.m1 Manihot esculenta cassava29576.valid.m1 N 0.716
cassava43930.valid.m1 Manihot esculenta cassava43930.valid.m1 N 0.867
Glyma02g17260.1 Glycine max Glyma02g17260.1 N 0.701
Glyma10g02550.1 Glycine max Glyma10g02550.1 N 0.709
Glyma17g02720.1 Glycine max Glyma17g02720.1 N 0.940
GRMZM2G036837 Zea mays GRMZM2G036837 N 0.711
GRMZM2G069009 Zea mays GRMZM2G069009 N 0.711
GRMZM2G086994 Zea mays GRMZM2G086994 N 0.726
GSVIVG00010980001 Vitis vinifera GSVIVG00010980001 N 0.724
GSVIVG00017774001 Vitis vinifera GSVIVG00017774001 N 0.843
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.701
LOC_Os01g15350 Oryza sativa LOC_Os01g15350 N 0.719
LOC_Os01g15460 Oryza sativa LOC_Os01g15460 N 0.716
MDP0000207283 Malus x domestica MDP0000207283 N 0.724
MDP0000319251 Malus x domestica MDP0000319251 N 0.851
MDP0000535412 Malus x domestica MDP0000535412 N 0.828
Medtr8g139290 Medicago truncatula Medtr8g139290 N 0.925
mgf002685m Mimulus guttatus mgf002685m N 0.791
mgf008934m Mimulus guttatus mgf008934m N 0.785
mgf026218m Mimulus guttatus mgf026218m N 0.731
PK29685.1 Cannabis sativa PK29685.1 N 0.813
ppa005056m Prunus persica ppa005056m N 0.851
ppa005229m Prunus persica ppa005229m N 0.731
SB03G009920 Sorghum bicolor Sb03g009920 N 0.704
SB03G009930 Sorghum bicolor Sb03g009930 N 0.711
XM_002871776.1 Arabidopsis lyrata fgenesh2_kg.6__1872__AT5G18550.1 N 0.748
XM_002880280.1 Arabidopsis lyrata scaffold_403761.1 N 0.709
XM_002884531.1 Arabidopsis lyrata fgenesh2_kg.3__645__AT3G06410.1 N 0.756