PCBP1 (Callithrix jacchus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSCJAG00000004017 T18529_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Pcbp1
M207_0.6 		Mus musculus CYUUCC RNAcompete
Ray et al.(2013)
RNCMPT00239 		0.957
PCBP1
M177_0.6 		Homo sapiens CCWWHCC RNAcompete
Ray et al.(2013)
RNCMPT00186 		0.957
PCBP2
M043_0.6 		Homo sapiens CCYYCCH RNAcompete
Ray et al.(2013)
RNCMPT00044 		0.899
pcbp2
M211_0.6 		Danio rerio WWUCCC RNAcompete
Ray et al.(2013)
RNCMPT00246 		0.872
Pcbp3
M188_0.6 		Mus musculus UUUYCC RNAcompete
Ray et al.(2013)
RNCMPT00215 		0.835
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000007302 KH 16 76
ENSCJAP00000007302 KH 99 162
ENSCJAP00000007302 KH 244 306

Links

Other KH family RBPs
Other Callithrix jacchus RBPs

108 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A6MK33_CALJA Callithrix jacchus ENSCJAG00000005783 I 0.000
AAH41241 Xenopus laevis AAH41241 I 0.888
AAH74333 Xenopus laevis AAH74333 N 0.000
AAH84195 Xenopus laevis AAH84195 I 0.888
AAI33216 Xenopus laevis AAI33216 N 0.000
Ame_R002707 Ailuropoda melanoleuca Ame_R002707 I 0.957
Ame_R007066 Ailuropoda melanoleuca Ame_R007066 N 0.000
CAB50743 Xenopus laevis CAB50743 I 0.888
CAD29864 Xenopus laevis CAD29864 I 0.888
D3ZWQ9_RAT Rattus norvegicus ENSRNOG00000038946 N 0.000
ENSACAG00000000783 Anolis carolinensis ENSACAG00000000783 I 0.899
ENSACAG00000009819 Anolis carolinensis ENSACAG00000009819 I 0.819
ENSCJAG00000034075 Callithrix jacchus ENSCJAG00000034075 I 0.894
ENSCPOG00000000967 Cavia porcellus ENSCPOG00000000967 I 0.899
ENSGACG00000003044 Gasterosteus aculeatus ENSGACG00000003044 I 0.716
ENSGACG00000006681 Gasterosteus aculeatus ENSGACG00000006681 I 0.851
ENSLAFG00000013187 Loxodonta africana ENSLAFG00000013187 I 0.899
ENSMGAG00000003895 Meleagris gallopavo ENSMGAG00000003895 N 0.000
ENSMGAG00000005091 Meleagris gallopavo ENSMGAG00000005091 N 0.000
ENSMGAG00000006794 Meleagris gallopavo ENSMGAG00000006794 I 0.777
ENSMODG00000000280 Monodelphis domestica ENSMODG00000000280 I 0.899
ENSOCUG00000022490 Oryctolagus cuniculus ENSOCUG00000022490 I 0.899
ENSORLG00000005176 Oryzias latipes ENSORLG00000005176 I 0.862
ENSORLG00000012872 Oryzias latipes ENSORLG00000012872 I 0.856
ENSORLG00000014385 Oryzias latipes ENSORLG00000014385 I 0.755
ENSPPYG00000004581 Pongo pygmaeus ENSPPYG00000004581 I 0.899
ENSPPYG00000011525 Pongo pygmaeus ENSPPYG00000011525 N 0.000
ENSPPYG00000012328 Pongo pygmaeus ENSPPYG00000012328 I 0.957
ENSPPYG00000013822 Pongo pygmaeus ENSPPYG00000013822 I 0.000
ENSTNIG00000003546 Tetraodon nigroviridis ENSTNIG00000003546 N 0.000
ENSTRUG00000009361 Takifugu rubripes ENSTRUG00000009361 I 0.862
ENSTRUG00000011419 Takifugu rubripes ENSTRUG00000011419 I 0.840
ENSTRUG00000017789 Takifugu rubripes ENSTRUG00000017789 I 0.705
LOC100050101 Equus caballus ENSECAG00000012413 I 0.835
LOC100050579 Equus caballus ENSECAG00000002544 I 0.957
LOC100060660 Equus caballus ENSECAG00000024218 I 0.000
LOC100392590 Callithrix jacchus ENSCJAG00000018590 I 0.888
LOC100408015 Callithrix jacchus ENSCJAG00000001903 I 0.835
LOC426023 Gallus gallus ENSGALG00000013313 N 0.000
pcbp1 Xenopus tropicalis ENSXETG00000011483 N 0.000
PCBP1 Pan troglodytes ENSPTRG00000012025 I 0.957
PCBP1 Myotis lucifugus ENSMLUG00000014173 I 0.957
PCBP1 Gorilla gorilla ENSGGOG00000028130 I 0.957
Pcbp1 Rattus norvegicus ENSRNOG00000017708 I 0.957
PCBP1 Tetraodon nigroviridis ENSTNIG00000012585 I 0.856
Pcbp1 Mus musculus ENSMUSG00000051695 D 0.957
PCBP1 Cavia porcellus ENSCPOG00000013511 I 0.957
PCBP1 Homo sapiens ENSG00000169564 D 0.957
PCBP1_BOVIN Bos taurus ENSBTAG00000008985 I 0.957
PCBP1_RABIT Oryctolagus cuniculus ENSOCUG00000003634 I 0.957
PCBP2 Equus caballus ENSECAG00000022389 I 0.899
PCBP2 Macaca mulatta ENSMMUG00000006608 I 0.899
PCBP2 Canis familiaris ENSCAFG00000006821 I 0.899
PCBP2 Homo sapiens ENSG00000197111 D 0.899
PCBP2 Erinaceus europaeus ENSEEUG00000001077 N 0.000
PCBP2 Procavia capensis ENSPCAG00000005154 I 0.899
Pcbp2 Mus musculus ENSMUSG00000056851 I 0.899
PCBP2 Tursiops truncatus ENSTTRG00000017174 I 0.899
PCBP2 Microcebus murinus ENSMICG00000011651 I 0.899
PCBP2 Vicugna pacos ENSVPAG00000000406 N 0.000
PCBP2 Gorilla gorilla ENSGGOG00000012613 I 0.899
PCBP2 Sus scrofa ENSSSCG00000000274 I 0.899
pcbp2 Danio rerio ENSDARG00000013184 D 0.872
PCBP2 Ochotona princeps ENSOPRG00000004680 I 0.899
PCBP2 Pteropus vampyrus ENSPVAG00000012284 I 0.899
PCBP2 Pan troglodytes ENSPTRG00000005018 I 0.899
PCBP2 Dasypus novemcinctus ENSDNOG00000008688 I 0.899
PCBP3 Cavia porcellus ENSCPOG00000003648 I 0.835
PCBP3 Oryzias latipes ENSORLG00000000059 I 0.788
PCBP3 Tursiops truncatus ENSTTRG00000015075 I 0.835
PCBP3 Canis familiaris ENSCAFG00000011907 N 0.000
PCBP3 Takifugu rubripes ENSTRUG00000013604 I 0.824
PCBP3 Pan troglodytes ENSPTRG00000014010 I 0.835
PCBP3 Takifugu rubripes ENSTRUG00000006280 I 0.824
Pcbp3 Rattus norvegicus ENSRNOG00000001245 I 0.835
PCBP3 Tetraodon nigroviridis ENSTNIG00000010615 I 0.824
pcbp3 Danio rerio ENSDARG00000054378 I 0.739
PCBP3 Homo sapiens ENSG00000183570 I 0.835
PCBP3 Gorilla gorilla ENSGGOG00000003683 I 0.835
PCBP3 Anolis carolinensis ENSACAG00000004607 I 0.835
PCBP3 Gallus gallus ENSGALG00000013155 I 0.824
PCBP3 Macropus eugenii ENSMEUG00000012960 I 0.803
PCBP3 Meleagris gallopavo ENSMGAG00000001883 I 0.835
PCBP3 Gallus gallus ENSGALG00000004394 I 0.809
PCBP3 Gasterosteus aculeatus ENSGACG00000014955 I 0.824
Pcbp3 Dipodomys ordii ENSDORG00000003640 N 0.000
PCBP3 Gasterosteus aculeatus ENSGACG00000002266 I 0.824
PCBP3 Macaca mulatta ENSMMUG00000003825 I 0.835
pcbp3 Xenopus tropicalis ENSXETG00000012658 I 0.888
Pcbp3 Mus musculus ENSMUSG00000001120 D 0.835
PCBP3 Oryctolagus cuniculus ENSOCUG00000002696 I 0.835
PCBP3 Ornithorhynchus anatinus ENSOANG00000006265 N 0.000
PCBP3-2 Taeniopygia guttata ENSTGUG00000008158 I 0.824
PCBP4 Tursiops truncatus ENSTTRG00000001443 N 0.000
PCBP4 Tetraodon nigroviridis ENSTNIG00000017887 I 0.725
PCBP4 Cavia porcellus ENSCPOG00000014617 I 0.000
PCBP4 Anolis carolinensis ENSACAG00000011701 I 0.700
Pcbp4 Rattus norvegicus ENSRNOG00000012406 I 0.000
PCBP4 Canis familiaris ENSCAFG00000010019 I 0.000
PCBP4 Takifugu rubripes ENSTRUG00000007426 I 0.730
PCBP4 Taeniopygia guttata ENSTGUG00000006393 I 0.000
PCBP4 Spermophilus tridecemlineatus ENSSTOG00000002573 N 0.000
PCBP4 Oryzias latipes ENSORLG00000003061 I 0.000
PCBP4 Oryctolagus cuniculus ENSOCUG00000025336 I 0.000
PCBP4 Ornithorhynchus anatinus ENSOANG00000014110 I 0.705
Pcbp4 Mus musculus ENSMUSG00000023495 I 0.000
PCBP4 Monodelphis domestica ENSMODG00000011790 I 0.000
PCBP4 Macaca mulatta ENSMMUG00000022205 I 0.000
PCBP4 Microcebus murinus ENSMICG00000002686 N 0.000
PCBP4 Macropus eugenii ENSMEUG00000006917 N 0.000
PCBP4 Loxodonta africana ENSLAFG00000010732 N 0.000
PCBP4 Homo sapiens ENSG00000090097 I 0.000
PCBP4 Felis catus ENSFCAG00000009148 N 0.000
PCBP4 Danio rerio ENSDARG00000024276 N 0.000
PCBP4 Ochotona princeps ENSOPRG00000008763 N 0.000
PCBP4 Gorilla gorilla ENSGGOG00000012474 I 0.000
PCBP4 Pteropus vampyrus ENSPVAG00000012474 N 0.000
PCBP4 Pan troglodytes ENSPTRG00000014983 I 0.000
Pcbp4 Dipodomys ordii ENSDORG00000000573 N 0.000
PCBP4 Gasterosteus aculeatus ENSGACG00000002664 I 0.725
PCBP4 Procavia capensis ENSPCAG00000009515 N 0.000
PCBP4 Echinops telfairi ENSETEG00000001778 N 0.000
PCBP4_BOVIN Bos taurus ENSBTAG00000018622 I 0.000
Q17QV0_BOVIN Bos taurus ENSBTAG00000030775 I 0.824
Q3SYT9_BOVIN Bos taurus ENSBTAG00000020757 I 0.899
zgc:110045 Danio rerio ENSDARG00000057141 N 0.000