mgf011401m (Mimulus guttatus)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 mgf011401m T24928_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf011401m PUF 496 530
mgf011401m PUF 532 566
mgf011401m PUF 569 602
mgf011401m PUF 604 638
mgf011401m PUF 640 674
mgf011401m PUF 677 710
mgf011401m PUF 713 747
mgf011401m PUF 760 789

Links

Other PUF family RBPs
Other Mimulus guttatus RBPs

73 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29595.m000292 Ricinus communis 29595.m000292 N 0.807
30143.m001162 Ricinus communis 30143.m001162 N 0.000
30143.m001164 Ricinus communis 30143.m001164 N 0.722
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.775
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.721
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.728
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.728
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.732
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.783
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.711
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.714
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.710
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.710
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.764
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.785
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.717
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.744
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.754
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.753
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.753
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.811
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.728
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.729
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.825
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.713
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.721
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.000
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.714
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.804
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.747
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.744
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.746
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.744
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.744
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.736
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.786
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.713
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.731
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.742
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.793
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.747
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.744
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.727
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.757
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.711
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.756
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.714
MDP0000119814 Malus x domestica MDP0000119814 N 0.778
MDP0000176743 Malus x domestica MDP0000176743 N 0.807
MDP0000314338 Malus x domestica MDP0000314338 N 0.725
MDP0000319167 Malus x domestica MDP0000319167 N 0.746
MDP0000776183 Malus x domestica MDP0000776183 N 0.718
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.815
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.743
mgf015234m Mimulus guttatus mgf015234m N 0.710
mgf015734m Mimulus guttatus mgf015734m N 0.736
PK00601.1 Cannabis sativa PK00601.1 N 0.729
PK01617.1 Cannabis sativa PK01617.1 N 0.801
PK21390.1 Cannabis sativa PK21390.1 N 0.736
ppa000626m Prunus persica ppa000626m N 0.722
ppa000627m Prunus persica ppa000627m N 0.736
ppa000731m Prunus persica ppa000731m N 0.833
SB03G039600 Sorghum bicolor Sb03g039600 N 0.761
SB04G037410 Sorghum bicolor Sb04g037410 N 0.749
SB09G001090 Sorghum bicolor Sb09g001090 N 0.717
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.804