Cucsa.308530 (Cucumis sativus)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 Cucsa.308530 T24715_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.308530.1 PUF 658 692
Cucsa.308530.1 PUF 694 728
Cucsa.308530.1 PUF 730 764
Cucsa.308530.1 PUF 766 800
Cucsa.308530.1 PUF 802 836
Cucsa.308530.1 PUF 839 872
Cucsa.308530.1 PUF 875 909
Cucsa.308530.1 PUF 922 951
Cucsa.308530.2 PUF 658 692
Cucsa.308530.2 PUF 714 748
Cucsa.308530.2 PUF 750 784
Cucsa.308530.2 PUF 786 820
Cucsa.308530.2 PUF 823 856
Cucsa.308530.2 PUF 859 893
Cucsa.308530.2 PUF 906 935

Links

Other PUF family RBPs
Other Cucumis sativus RBPs

76 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa000731m Prunus persica ppa000731m N 0.909
PK01617.1 Cannabis sativa PK01617.1 N 0.877
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.876
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.873
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.873
29595.m000292 Ricinus communis 29595.m000292 N 0.869
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.859
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.858
MDP0000176743 Malus x domestica MDP0000176743 N 0.858
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.855
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.851
MDP0000119814 Malus x domestica MDP0000119814 N 0.851
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.844
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.829
mgf011401m Mimulus guttatus mgf011401m N 0.825
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.822
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.822
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.818
SB04G037410 Sorghum bicolor Sb04g037410 N 0.811
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.807
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.798
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.786
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.786
SB03G039600 Sorghum bicolor Sb03g039600 N 0.786
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.780
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.775
30143.m001164 Ricinus communis 30143.m001164 N 0.773
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.772
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.771
PK00601.1 Cannabis sativa PK00601.1 N 0.769
ppa000626m Prunus persica ppa000626m N 0.769
MDP0000314338 Malus x domestica MDP0000314338 N 0.764
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.764
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.764
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.763
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.763
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.761
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.757
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.757
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.757
SB09G001090 Sorghum bicolor Sb09g001090 N 0.756
MDP0000776183 Malus x domestica MDP0000776183 N 0.755
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.755
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.754
MDP0000319167 Malus x domestica MDP0000319167 N 0.754
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.753
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.751
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.750
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.750
PK21390.1 Cannabis sativa PK21390.1 N 0.750
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.750
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.747
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.747
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.747
mgf015234m Mimulus guttatus mgf015234m N 0.746
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.746
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.746
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.744
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.743
mgf015734m Mimulus guttatus mgf015734m N 0.743
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.740
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.739
ppa000627m Prunus persica ppa000627m N 0.739
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.739
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.736
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.736
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.736
30143.m001162 Ricinus communis 30143.m001162 N 0.733
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.732
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.732
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.730
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.728
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.728
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.725
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.725
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.714