B9HUI2_POPTR (Populus trichocarpa)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 POPTR_0010s23250 T24431_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0010s23250.1 PUF 670 704
POPTR_0010s23250.1 PUF 706 740
POPTR_0010s23250.1 PUF 742 777
POPTR_0010s23250.1 PUF 778 812
POPTR_0010s23250.1 PUF 814 848
POPTR_0010s23250.1 PUF 851 885
POPTR_0010s23250.1 PUF 887 921
POPTR_0010s23250.1 PUF 934 963

Links

Other PUF family RBPs
Other Populus trichocarpa RBPs

76 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.909
ppa000731m Prunus persica ppa000731m N 0.862
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.862
29595.m000292 Ricinus communis 29595.m000292 N 0.855
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.844
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.841
PK01617.1 Cannabis sativa PK01617.1 N 0.838
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.834
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.819
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.819
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.816
MDP0000176743 Malus x domestica MDP0000176743 N 0.815
MDP0000119814 Malus x domestica MDP0000119814 N 0.793
mgf011401m Mimulus guttatus mgf011401m N 0.783
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.783
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.775
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.772
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.768
SB03G039600 Sorghum bicolor Sb03g039600 N 0.768
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.765
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.764
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.764
ppa000626m Prunus persica ppa000626m N 0.762
SB04G037410 Sorghum bicolor Sb04g037410 N 0.761
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.757
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.755
30143.m001164 Ricinus communis 30143.m001164 N 0.755
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.754
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.754
mgf015734m Mimulus guttatus mgf015734m N 0.754
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.754
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.754
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.751
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.751
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.751
MDP0000314338 Malus x domestica MDP0000314338 N 0.750
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.750
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.750
PK00601.1 Cannabis sativa PK00601.1 N 0.747
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.747
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.747
ppa000627m Prunus persica ppa000627m N 0.746
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.746
MDP0000776183 Malus x domestica MDP0000776183 N 0.744
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.743
mgf015234m Mimulus guttatus mgf015234m N 0.743
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.743
PK21390.1 Cannabis sativa PK21390.1 N 0.743
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.740
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.740
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.740
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.739
MDP0000319167 Malus x domestica MDP0000319167 N 0.739
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.732
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.731
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.729
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.729
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.729
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.729
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.728
30143.m001162 Ricinus communis 30143.m001162 N 0.726
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.726
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.726
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.726
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.725
SB09G001090 Sorghum bicolor Sb09g001090 N 0.724
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.724
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.724
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.722
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.722
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.722
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.721
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.721
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.720
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.719
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.700