Medtr1g120450 (Medicago truncatula)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 Medtr1g120450 T24966_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr1g120450.1 PUF 642 676
Medtr1g120450.1 PUF 678 712
Medtr1g120450.1 PUF 714 748
Medtr1g120450.1 PUF 750 784
Medtr1g120450.1 PUF 786 821
Medtr1g120450.1 PUF 823 857
Medtr1g120450.1 PUF 859 893
Medtr1g120450.1 PUF 906 935

Links

Other PUF family RBPs
Other Medicago truncatula RBPs

76 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.931
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.924
PK01617.1 Cannabis sativa PK01617.1 N 0.891
ppa000731m Prunus persica ppa000731m N 0.884
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.873
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.862
29595.m000292 Ricinus communis 29595.m000292 N 0.855
MDP0000176743 Malus x domestica MDP0000176743 N 0.848
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.841
MDP0000119814 Malus x domestica MDP0000119814 N 0.833
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.830
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.826
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.816
mgf011401m Mimulus guttatus mgf011401m N 0.815
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.804
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.797
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.797
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.797
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.794
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.791
SB04G037410 Sorghum bicolor Sb04g037410 N 0.786
PK00601.1 Cannabis sativa PK00601.1 N 0.783
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.783
30143.m001164 Ricinus communis 30143.m001164 N 0.780
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.780
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.780
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.780
ppa000626m Prunus persica ppa000626m N 0.776
SB03G039600 Sorghum bicolor Sb03g039600 N 0.776
MDP0000314338 Malus x domestica MDP0000314338 N 0.773
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.773
MDP0000776183 Malus x domestica MDP0000776183 N 0.765
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.764
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.764
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.762
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.762
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.761
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.758
SB09G001090 Sorghum bicolor Sb09g001090 N 0.757
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.754
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.754
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.754
mgf015234m Mimulus guttatus mgf015234m N 0.751
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.744
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.744
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.744
mgf015734m Mimulus guttatus mgf015734m N 0.744
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.740
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.740
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.740
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.740
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.740
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.740
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.740
30143.m001162 Ricinus communis 30143.m001162 N 0.740
PK21390.1 Cannabis sativa PK21390.1 N 0.740
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.740
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.740
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.740
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.740
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.740
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.736
MDP0000319167 Malus x domestica MDP0000319167 N 0.736
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.734
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.733
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.733
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.733
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.729
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.729
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.729
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.729
ppa000627m Prunus persica ppa000627m N 0.729
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.728
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.725
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.724
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.718