SB04G037410 (Sorghum bicolor)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 Sb04g037410 T24448_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb04g037410.1 PUF 665 699
Sb04g037410.1 PUF 701 735
Sb04g037410.1 PUF 737 771
Sb04g037410.1 PUF 773 807
Sb04g037410.1 PUF 809 842
Sb04g037410.1 PUF 846 880
Sb04g037410.1 PUF 882 916
Sb04g037410.1 PUF 929 958

Links

Other PUF family RBPs
Other Sorghum bicolor RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.974
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.923
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.920
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.811
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.804
ppa000731m Prunus persica ppa000731m N 0.804
PK01617.1 Cannabis sativa PK01617.1 N 0.786
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.786
29595.m000292 Ricinus communis 29595.m000292 N 0.785
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.785
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.779
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.776
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.775
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.771
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.768
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.768
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.767
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.764
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.764
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.763
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.763
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.761
MDP0000176743 Malus x domestica MDP0000176743 N 0.760
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.760
30143.m001164 Ricinus communis 30143.m001164 N 0.758
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.756
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.755
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.754
MDP0000119814 Malus x domestica MDP0000119814 N 0.753
ppa000626m Prunus persica ppa000626m N 0.751
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.750
SB03G039600 Sorghum bicolor Sb03g039600 N 0.750
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.750
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.750
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.750
MDP0000314338 Malus x domestica MDP0000314338 N 0.750
SB09G001090 Sorghum bicolor Sb09g001090 N 0.749
MDP0000319167 Malus x domestica MDP0000319167 N 0.749
mgf011401m Mimulus guttatus mgf011401m N 0.749
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.749
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.747
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.746
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.746
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.745
PK00601.1 Cannabis sativa PK00601.1 N 0.744
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.743
PK21390.1 Cannabis sativa PK21390.1 N 0.743
mgf015234m Mimulus guttatus mgf015234m N 0.743
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.742
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.738
mgf015734m Mimulus guttatus mgf015734m N 0.738
MDP0000776183 Malus x domestica MDP0000776183 N 0.736
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.736
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.736
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.735
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.735
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.735
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.733
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.733
ppa000627m Prunus persica ppa000627m N 0.731
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.731
30143.m001162 Ricinus communis 30143.m001162 N 0.729
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.729
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.729
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.728
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.726
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.726
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.726
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.726
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.726
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.726
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.722
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.722
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.722
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.713