GSVIVG00016236001 (Vitis vinifera)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 GSVIVG00016236001 T24369_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00016236001 PUF 691 725
GSVIVT00016236001 PUF 727 760
GSVIVT00016236001 PUF 763 797
GSVIVT00016236001 PUF 799 833
GSVIVT00016236001 PUF 835 869
GSVIVT00016236001 PUF 873 906
GSVIVT00016236001 PUF 908 942
GSVIVT00016236001 PUF 956 984

Links

Other PUF family RBPs
Other Vitis vinifera RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa000731m Prunus persica ppa000731m N 0.895
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.869
29595.m000292 Ricinus communis 29595.m000292 N 0.855
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.851
PK01617.1 Cannabis sativa PK01617.1 N 0.848
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.843
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.840
MDP0000176743 Malus x domestica MDP0000176743 N 0.836
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.830
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.828
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.826
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.819
MDP0000119814 Malus x domestica MDP0000119814 N 0.815
mgf011401m Mimulus guttatus mgf011401m N 0.793
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.793
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.786
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.785
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.779
SB04G037410 Sorghum bicolor Sb04g037410 N 0.779
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.779
SB03G039600 Sorghum bicolor Sb03g039600 N 0.769
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.769
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.762
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.757
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.755
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.755
ppa000626m Prunus persica ppa000626m N 0.751
PK00601.1 Cannabis sativa PK00601.1 N 0.751
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.750
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.750
30143.m001164 Ricinus communis 30143.m001164 N 0.747
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.746
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.746
MDP0000314338 Malus x domestica MDP0000314338 N 0.744
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.744
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.743
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.743
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.743
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.743
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.743
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.743
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.743
mgf015734m Mimulus guttatus mgf015734m N 0.742
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.742
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.740
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.739
PK21390.1 Cannabis sativa PK21390.1 N 0.739
MDP0000319167 Malus x domestica MDP0000319167 N 0.739
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.738
ppa000627m Prunus persica ppa000627m N 0.738
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.737
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.737
MDP0000776183 Malus x domestica MDP0000776183 N 0.736
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.736
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.735
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.733
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.733
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.732
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.732
SB09G001090 Sorghum bicolor Sb09g001090 N 0.732
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.729
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.729
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.728
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.728
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.725
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.725
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.724
mgf015234m Mimulus guttatus mgf015234m N 0.722
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.721
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.721
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.721
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.720
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.720
30143.m001162 Ricinus communis 30143.m001162 N 0.715
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.701