Glyma20g32230.1 (Glycine max)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 Glyma20g32230.1 T24899_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma20g32230.1 PUF 631 665
Glyma20g32230.1 PUF 667 701
Glyma20g32230.1 PUF 703 737
Glyma20g32230.1 PUF 739 773
Glyma20g32230.1 PUF 775 810
Glyma20g32230.1 PUF 815 846
Glyma20g32230.1 PUF 848 882
Glyma20g32230.1 PUF 895 924

Links

Other PUF family RBPs
Other Glycine max RBPs

76 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.967
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.924
ppa000731m Prunus persica ppa000731m N 0.887
PK01617.1 Cannabis sativa PK01617.1 N 0.880
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.859
MDP0000176743 Malus x domestica MDP0000176743 N 0.858
29595.m000292 Ricinus communis 29595.m000292 N 0.851
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.851
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.839
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.830
MDP0000119814 Malus x domestica MDP0000119814 N 0.830
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.828
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.819
mgf011401m Mimulus guttatus mgf011401m N 0.786
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.786
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.783
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.783
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.782
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.780
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.779
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.776
PK00601.1 Cannabis sativa PK00601.1 N 0.776
ppa000626m Prunus persica ppa000626m N 0.776
30143.m001164 Ricinus communis 30143.m001164 N 0.773
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.773
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.768
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.768
SB04G037410 Sorghum bicolor Sb04g037410 N 0.767
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.765
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.764
MDP0000314338 Malus x domestica MDP0000314338 N 0.762
SB03G039600 Sorghum bicolor Sb03g039600 N 0.762
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.758
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.758
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.758
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.756
MDP0000776183 Malus x domestica MDP0000776183 N 0.755
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.755
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.753
SB09G001090 Sorghum bicolor Sb09g001090 N 0.750
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.747
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.747
PK21390.1 Cannabis sativa PK21390.1 N 0.747
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.746
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.746
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.746
ppa000627m Prunus persica ppa000627m N 0.745
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.745
mgf015734m Mimulus guttatus mgf015734m N 0.745
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.745
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.745
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.745
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.744
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.744
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.744
mgf015234m Mimulus guttatus mgf015234m N 0.744
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.744
MDP0000319167 Malus x domestica MDP0000319167 N 0.742
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.742
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.740
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.740
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.739
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.738
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.738
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.735
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.734
30143.m001162 Ricinus communis 30143.m001162 N 0.733
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.733
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.726
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.725
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.725
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.721
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.720
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.717
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.714
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.714