LOAG_01058 (Loa loa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOAG_01058 T29566_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.711
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.711
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.711
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.708
pAbp
M130_0.6 		Drosophila melanogaster GAAAAHV RNAcompete
Ray et al.(2013)
RNCMPT00139 		0.705
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
LOAG_01058T0 RRM 20 90
LOAG_01058T0 RRM 108 177
LOAG_01058T0 RRM 201 270
LOAG_01058T0 RRM 306 375

Links

Other RRM family RBPs
Other Loa loa RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30174.m009088 Ricinus communis 30174.m009088 N 0.000
ATE1 Arabidopsis thaliana AT1G13690-TAIR-G N 0.000
B9HIG1_POPTR Populus trichocarpa POPTR_0008s09710 N 0.000
B9HXI2_POPTR Populus trichocarpa POPTR_0010s16450 N 0.000
BGIOSIBCE012002 Oryza indica BGIOSIBCE012002 N 0.000
BRADI1G15040 Brachypodium distachyon BRADI1G15040 N 0.000
cassava7442.valid.m1 Manihot esculenta cassava7442.valid.m1 N 0.000
Cucsa.327930 Cucumis sativus Cucsa.327930 N 0.000
estExt_Genewise1.C_40283 Selaginella moellendorfii estExt_Genewise1.C_40283 N 0.000
Glyma02g13280.1 Glycine max Glyma02g13280.1 N 0.000
GRMZM2G138572 Zea mays GRMZM2G138572 N 0.000
GSVIVG00010778001 Vitis vinifera GSVIVG00010778001 N 0.000
LOC_Os03g40310 Oryza sativa LOC_Os03g40310 N 0.000
MDP0000193642 Malus x domestica MDP0000193642 N 0.000
MDP0000219767 Malus x domestica MDP0000219767 N 0.000
MDP0000271129 Malus x domestica MDP0000271129 N 0.000
MDP0000319973 Malus x domestica MDP0000319973 N 0.000
MDP0000588137 Malus x domestica MDP0000588137 N 0.000
Medtr5g047590 Medicago truncatula Medtr5g047590 N 0.000
ppa012381m Prunus persica ppa012381m N 0.000
SB01G015060 Sorghum bicolor Sb01g015060 N 0.000
XM_002889971.1 Arabidopsis lyrata fgenesh2_kg.1__1483__AT1G13690.1 N 0.000