amel4_ncbi_hmm4978 (Apis mellifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 amel4_ncbi_hmm4978 T31922_0.6 DroSpeGe (2008-Jul-18)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.932
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.888
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.856
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
amel4_ncbi_hmm4978 RRM 111 177
amel4_ncbi_hmm4978 RRM 219 283

Links

Other RRM family RBPs
Other Apis mellifera RBPs

149 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
111676 Helobdella robusta 111676 I 0.770
69117 Helobdella robusta 69117 N 0.731
79994 Helobdella robusta 79994 I 0.741
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.876
AAEL012065 Aedes aegypti AAEL012065 I 0.746
ADH10187 Xenopus laevis ADH10187 I 0.876
AGAP002296 Anopheles gambiae AGAP002296 I 0.828
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.862
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.902
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.876
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.902
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.902
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.872
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.902
CPEB2 Gallus gallus ENSGALG00000014516 I 0.902
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.872
CPEB2 Homo sapiens ENSG00000137449 D 0.902
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.902
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.902
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.902
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.902
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.902
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.902
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.902
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.902
CPEB2 Sorex araneus ENSSARG00000010559 I 0.812
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.902
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.902
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.902
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.879
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.902
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.872
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.812
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.850
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.872
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.902
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.902
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.902
CPEB2 Bos taurus ENSBTAG00000019847 I 0.902
CPEB2 Equus caballus ENSECAG00000008722 I 0.902
CPEB2 Danio rerio ENSDARG00000052604 I 0.784
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.862
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.862
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.862
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.862
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.862
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.862
CPEB3 Vicugna pacos ENSVPAG00000002144 I 0.701
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.855
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.862
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.849
CPEB3 Sorex araneus ENSSARG00000001994 I 0.856
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.862
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.856
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.850
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.862
CPEB3 Procavia capensis ENSPCAG00000012417 I 0.783
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.862
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.856
CPEB3 Homo sapiens ENSG00000107864 I 0.862
CPEB3 Equus caballus ENSECAG00000000077 I 0.856
cpeb3 Danio rerio ENSDARG00000060103 I 0.856
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.862
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.862
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.752
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.862
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.856
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.862
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.848
CPEB3 Gallus gallus ENSGALG00000006912 I 0.862
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.862
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.862
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.862
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.862
CPEB3 Myotis lucifugus ENSMLUG00000009474 I 0.701
CPEB3 Bos taurus ENSBTAG00000015450 I 0.862
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.876
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.876
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.775
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.876
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.870
CPEB4 Sus scrofa ENSSSCG00000016981 I 0.727
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.883
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.876
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.876
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.870
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.803
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.876
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.876
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.891
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.876
CPEB4 Danio rerio ENSDARG00000060495 I 0.876
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.883
CPEB4 Sorex araneus ENSSARG00000013389 I 0.861
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.876
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.876
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.876
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.883
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.876
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.869
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.876
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.876
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.876
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.876
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.876
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.863
CPEB4 Gallus gallus ENSGALG00000014074 I 0.863
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.863
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.876
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.876
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.876
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.876
CPEB4 Homo sapiens ENSG00000113742 D 0.876
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.876
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.863
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.955
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.902
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.853
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.862
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.902
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.876
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.856
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.864
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.871
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.917
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.799
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.932
GE21274 Drosophila yakuba FBgn0238542 I 0.932
GF10140 Drosophila ananassae FBgn0087181 I 0.924
GG15051 Drosophila erecta FBgn0107305 I 0.932
GH16131 Drosophila grimshawi FBgn0123602 I 0.924
GI12400 Drosophila mojavensis FBgn0135157 I 0.932
GJ12289 Drosophila virilis FBgn0199538 I 0.932
GK17460 Drosophila willistoni FBgn0219459 I 0.932
GL20808 Drosophila persimilis FBgn0158403 I 0.932
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.910
ISCW010113 Ixodes scapularis ISCW010113 I 0.940
LOC100058918 Equus caballus ENSECAG00000016921 I 0.876
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.862
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.902
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.913
orb2 Drosophila melanogaster FBgn0262573 D 0.932
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.882
PHUM335520 Pediculus humanus PHUM335520 I 0.917
SNAPOd2T00005918001 Oikopleura dioica SNAPOd2T00005918001 I 0.769
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.910
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.791
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.910
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.902