CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SRSF5
(
Echinops telfairi
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSETEG00000020396
T37028_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
SRSF5
M357_0.6
Homo sapiens
Sequence logo not available
UGGGAGCRGUYRGCUCGY
SELEX
Cook et al.(2011)
985_9037021
0.729
SRSF5
M356_0.6
Homo sapiens
Sequence logo not available
UGGGAGCRGUYRGCUCGY
SELEX
Cook et al.(2011)
984_9037021
0.729
SRSF5
M355_0.6
Homo sapiens
Sequence logo not available
UGGGAGCRGUYRGCUCGY
SELEX
Cook et al.(2011)
983_9037021
0.729
B52
M334_0.6
Drosophila melanogaster
GRUCAACCNGGCGACMG
SELEX
Cook et al.(2011)
802_9111335
0.721
B52
M126_0.6
Drosophila melanogaster
GGASGRV
RNAcompete
Ray et al.(2013)
RNCMPT00134
0.721
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSETEP00000016575
RRM
6
68
VFIGRLNPAAREKDVERFFKGYGRIKDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSERVT
ENSETEP00000016575
RRM
109
174
LIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIK
Links
Other
RRM
family RBPs
Other
Echinops telfairi
RBPs
130 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CPIJ015349
Culex quinquefasciatus
CPIJ015349
N
0.000
CpipJ_CPIJ006994
Culex pipiens
CpipJ_CPIJ006994
N
0.000
CpipJ_CPIJ007614
Culex pipiens
CpipJ_CPIJ007614
N
0.000
CpipJ_CPIJ009564
Culex pipiens
CpipJ_CPIJ009564
N
0.000
CpipJ_CPIJ014538
Culex pipiens
CpipJ_CPIJ014538
N
0.000
CpipJ_CPIJ015349
Culex pipiens
CpipJ_CPIJ015349
N
0.000
Glyma02g36930.1
Glycine max
Glyma02g36930.1
N
0.000
Glyma11g04990.1
Glycine max
Glyma11g04990.1
N
0.000
Glyma13g21780.1
Glycine max
Glyma13g21780.1
N
0.000
GSVIVG00021646001
Vitis vinifera
GSVIVG00021646001
N
0.000