SRSF5 (Echinops telfairi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSETEG00000020396 T37028_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF5
M357_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
985_9037021 		0.729
SRSF5
M356_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
984_9037021 		0.729
SRSF5
M355_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
983_9037021 		0.729
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.721
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSETEP00000016575 RRM 6 68
ENSETEP00000016575 RRM 109 174

Links

Other RRM family RBPs
Other Echinops telfairi RBPs

130 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPIJ015349 Culex quinquefasciatus CPIJ015349 N 0.000
CpipJ_CPIJ006994 Culex pipiens CpipJ_CPIJ006994 N 0.000
CpipJ_CPIJ007614 Culex pipiens CpipJ_CPIJ007614 N 0.000
CpipJ_CPIJ009564 Culex pipiens CpipJ_CPIJ009564 N 0.000
CpipJ_CPIJ014538 Culex pipiens CpipJ_CPIJ014538 N 0.000
CpipJ_CPIJ015349 Culex pipiens CpipJ_CPIJ015349 N 0.000
Glyma02g36930.1 Glycine max Glyma02g36930.1 N 0.000
Glyma11g04990.1 Glycine max Glyma11g04990.1 N 0.000
Glyma13g21780.1 Glycine max Glyma13g21780.1 N 0.000
GSVIVG00021646001 Vitis vinifera GSVIVG00021646001 N 0.000