SNRPB2 (Meleagris gallopavo)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMGAG00000006135 T38369_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.813
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.799
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.799
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.799
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.799
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.799
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.799
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.799
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.799
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMGAP00000006130 RRM 9 80
ENSMGAP00000006130 RRM 154 220

Links

Other RRM family RBPs
Other Meleagris gallopavo RBPs

118 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
105398 Helobdella robusta 105398 I 0.712
186191 Helobdella robusta 186191 I 0.755
AAEL002980 Aedes aegypti AAEL002980 I 0.820
AAEL014167 Aedes aegypti AAEL014167 I 0.820
AAH44979 Xenopus laevis AAH44979 I 0.784
AAH72799 Xenopus laevis AAH72799 I 0.921
AAH84107 Xenopus laevis AAH84107 I 0.892
AGAP011637 Anopheles gambiae AGAP011637 I 0.799
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.827
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.799
Ame_R017767 Ailuropoda melanoleuca Ame_R017767 I 0.978
Aqu1.229782 Amphimedon queenslandica Aqu1.229782 I 0.712
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.799
CAA41021 Xenopus laevis CAA41021 I 0.784
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.820
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.820
DGIL_AUG5s14106g2t1 Acyrtosiphon pisum DGIL_AUG5s14106g2t1 I 0.763
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.777
ENSCJAG00000014865 Callithrix jacchus ENSCJAG00000014865 I 0.727
ENSCSAVG00000000396 Ciona savignyi ENSCSAVG00000000396 I 0.727
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.799
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.799
ENSPPYG00000010723 Pongo pygmaeus ENSPPYG00000010723 I 0.978
ENSTGUG00000014863 Taeniopygia guttata ENSTGUG00000014863 N 0.719
ENSTGUG00000016203 Taeniopygia guttata ENSTGUG00000016203 I 0.856
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.820
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.820
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.820
e_gw.11.168.1 Nematostella vectensis e_gw.11.168.1 I 0.784
e_gw1.1.761.1 Trichoplax adhaerens e_gw1.1.761.1 I 0.734
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.827
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.813
GE16390 Drosophila yakuba FBgn0233919 I 0.813
GF21334 Drosophila ananassae FBgn0098336 I 0.813
GG18748 Drosophila erecta FBgn0110957 I 0.813
GH24608 Drosophila grimshawi FBgn0132064 I 0.820
GJ16850 Drosophila virilis FBgn0204029 I 0.820
GK25839 Drosophila willistoni FBgn0227798 I 0.820
GL14287 Drosophila persimilis FBgn0151892 I 0.813
GM12396 Drosophila sechellia FBgn0167333 I 0.813
LOC100050830 Equus caballus ENSECAG00000018407 I 0.978
LOC100068274 Equus caballus ENSECAG00000013141 I 0.799
LOC100394904 Callithrix jacchus ENSCJAG00000022477 I 0.892
LOC100407601 Callithrix jacchus ENSCJAG00000023308 I 0.935
LOC100408625 Callithrix jacchus ENSCJAG00000004811 I 0.978
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.784
LOC477148 Canis familiaris ENSCAFG00000005520 I 0.978
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.842
P45429 Xenopus laevis P45429 I 0.784
Q3T0M6_BOVIN Bos taurus ENSBTAG00000027506 I 0.978
snf Drosophila mojavensis FBgn0069598 I 0.820
snf Drosophila melanogaster FBgn0003449 D 0.813
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.813
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.784
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.806
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.777
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.799
SNRPA Oryzias latipes ENSORLG00000006536 I 0.784
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.799
SNRPA Macropus eugenii ENSMEUG00000002434 I 0.712
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.799
SNRPA Gasterosteus aculeatus ENSGACG00000009838 I 0.770
SNRPA Homo sapiens ENSG00000077312 D 0.799
SNRPA Echinops telfairi ENSETEG00000019205 I 0.763
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.784
snrpa Danio rerio ENSDARG00000018890 I 0.791
SNRPA Felis catus ENSFCAG00000016209 I 0.799
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.799
SNRPA Canis familiaris ENSCAFG00000005091 I 0.799
SNRPA Sus scrofa ENSSSCG00000002998 I 0.799
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.799
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.799
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.799
SNRPA Procavia capensis ENSPCAG00000012325 I 0.806
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.799
SNRPA Oryctolagus cuniculus ENSOCUG00000024618 I 0.755
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.799
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.799
Snrpa Mus musculus ENSMUSG00000061479 I 0.806
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.799
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.799
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 0.978
SNRPB2 Homo sapiens ENSG00000125870 I 0.978
SNRPB2 Gasterosteus aculeatus ENSGACG00000019682 I 0.835
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 0.978
SNRPB2 Monodelphis domestica ENSMODG00000005392 I 0.957
SNRPB2 Anolis carolinensis ENSACAG00000000582 I 0.964
SNRPB2 Myotis lucifugus ENSMLUG00000008163 I 0.971
SNRPB2 Echinops telfairi ENSETEG00000001085 I 0.921
SNRPB2 Dasypus novemcinctus ENSDNOG00000014137 N 0.820
snrpb2 Danio rerio ENSDARG00000039424 I 0.849
SNRPB2 Oryctolagus cuniculus ENSOCUG00000001427 I 0.971
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 0.978
SNRPB2 Cavia porcellus ENSCPOG00000005014 I 0.978
Snrpb2 Mus musculus ENSMUSG00000008333 I 0.978
SNRPB2 Gallus gallus ENSGALG00000008729 I 1.000
SNRPB2 Oryzias latipes ENSORLG00000019421 I 0.827
SNRPB2 Tetraodon nigroviridis ENSTNIG00000002735 I 0.835
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 0.978
SNRPB2 Taeniopygia guttata ENSTGUG00000002415 I 0.993
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 0.978
SNRPB2 Pteropus vampyrus ENSPVAG00000016140 I 0.942
SNRPB2 Spermophilus tridecemlineatus ENSSTOG00000009198 I 0.978
SNRPB2 Sus scrofa ENSSSCG00000007081 I 0.978
SNRPB2 Sorex araneus ENSSARG00000002681 I 0.978
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 0.978
SNRPB2 Takifugu rubripes ENSTRUG00000009060 I 0.835
SNRPB2 Macaca mulatta ENSMMUG00000014493 I 0.978
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 0.978
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 0.978
SNRPB2 Procavia capensis ENSPCAG00000003156 I 0.971
SNRPB2 Macropus eugenii ENSMEUG00000016552 I 0.878
SNRPB2 Microcebus murinus ENSMICG00000015404 I 0.978
snrpb2 Xenopus tropicalis ENSXETG00000003550 I 0.928
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 0.978
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 0.978
SNRPB2 Tarsius syrichta ENSTSYG00000008857 I 0.978
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.806