CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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NCL
(
Ornithorhynchus anatinus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSOANG00000008732
T39507_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
NCL
M245_0.6
Homo sapiens
CCGAAAKCCCGAAGYAGG
SELEX
Cook et al.(2011)
1004_8676391
0.808
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOANP00000013915
RRM
228
296
LFIGNLNFSKTAPELKTGLSDFFTKNDLTVLDVRVGVSRKFGYVDFESADDLEKALELNGSKVFGNEMK
ENSOANP00000013915
RRM
314
380
LFVKNLPYKVTQEEMKEVFEDAVDVRLVTGKDGMSKGIAYIEFKTEADADKALEEKQGTEIDGRSII
ENSOANP00000013915
RRM
409
475
IVVNNLAYSATEEGLQEVFEKATSIKVPQNHQGRPKGYAFVEFSTPEEAKEALNSLNNVEIEGRTIR
ENSOANP00000013915
RRM
497
564
LFVKGLSEETTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNTAEEAKAAKEAMEDGEIDGNKVT
ENSOANP00000013916
RRM
231
299
LFIGNLNFSKTAPELKTGLSDFFTKNDLTVLDVRVGVSRKFGYVDFESADDLEKALELNGSKVFGNEMK
ENSOANP00000013916
RRM
317
383
LFVKNLPYKVTQEEMKEVFEDAVDVRLVTGKDGMSKGIAYIEFKTEADADKALEEKQGTEIDGRSII
ENSOANP00000013916
RRM
412
478
IVVNNLAYSATEEGLQEVFEKATSIKVPQNHQGRPKGYAFVEFSTPEEAKEALNSLNNVEIEGRTIR
ENSOANP00000013916
RRM
497
564
LFVKGLSEETTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNTAEEAKAAKEAMEDGEIDGNKVT
Links
Other
RRM
family RBPs
Other
Ornithorhynchus anatinus
RBPs
34 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GD21193
Drosophila simulans
FBgn0192644
N
0.000
GE23579
Drosophila yakuba
FBgn0240752
N
0.000
GM17825
Drosophila sechellia
FBgn0172732
N
0.000
Nup358
Drosophila melanogaster
FBgn0039302
N
0.000