NCL (Ornithorhynchus anatinus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOANG00000008732 T39507_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCL
M245_0.6 		Homo sapiens CCGAAAKCCCGAAGYAGG SELEX
Cook et al.(2011)
1004_8676391 		0.808
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOANP00000013915 RRM 228 296
ENSOANP00000013915 RRM 314 380
ENSOANP00000013915 RRM 409 475
ENSOANP00000013915 RRM 497 564
ENSOANP00000013916 RRM 231 299
ENSOANP00000013916 RRM 317 383
ENSOANP00000013916 RRM 412 478
ENSOANP00000013916 RRM 497 564

Links

Other RRM family RBPs
Other Ornithorhynchus anatinus RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R005385 Ailuropoda melanoleuca Ame_R005385 I 0.823
ENSBTAG00000026909 Bos taurus ENSBTAG00000026909 I 0.804
ENSETEG00000014756 Echinops telfairi ENSETEG00000014756 I 0.801
ENSETEG00000018937 Echinops telfairi ENSETEG00000018937 I 0.797
ENSPPYG00000013265 Pongo pygmaeus ENSPPYG00000013265 I 0.716
ENSRNOG00000008664 Rattus norvegicus ENSRNOG00000008664 I 0.760
ENSSSCG00000016275 Sus scrofa ENSSSCG00000016275 I 0.720
LOC100395223 Callithrix jacchus ENSCJAG00000013538 I 0.804
NCL Oryctolagus cuniculus ENSOCUG00000004312 I 0.812
NCL Pan troglodytes ENSPTRG00000013025 I 0.808
NCL Pteropus vampyrus ENSPVAG00000000297 I 0.823
NCL Vicugna pacos ENSVPAG00000001796 I 0.701
Ncl Rattus norvegicus ENSRNOG00000018273 I 0.760
ncl Xenopus tropicalis ENSXETG00000009517 N 0.705
NCL Taeniopygia guttata ENSTGUG00000009782 N 0.712
NCL Tarsius syrichta ENSTSYG00000004355 I 0.812
NCL Tursiops truncatus ENSTTRG00000009094 I 0.834
Ncl Mus musculus ENSMUSG00000026234 I 0.756
NCL Monodelphis domestica ENSMODG00000002470 I 0.812
NCL Bos taurus ENSBTAG00000016174 I 0.819
NCL Canis familiaris ENSCAFG00000011037 I 0.823
NCL Cavia porcellus ENSCPOG00000001034 I 0.716
Ncl Dipodomys ordii ENSDORG00000012513 I 0.738
NCL Erinaceus europaeus ENSEEUG00000005913 I 0.793
NCL Homo sapiens ENSG00000115053 D 0.808
NCL Gorilla gorilla ENSGGOG00000004300 I 0.808
NCL Macropus eugenii ENSMEUG00000012335 I 0.808
NCL Meleagris gallopavo ENSMGAG00000008147 I 0.716
NCL Microcebus murinus ENSMICG00000002538 I 0.790
NCL Macaca mulatta ENSMMUG00000018094 I 0.808
NCL Anolis carolinensis ENSACAG00000001006 N 0.712
NUCL_CHICK Gallus gallus ENSGALG00000007705 I 0.712
Q6X9Z0_HORSE Equus caballus ENSECAG00000021868 I 0.815