ENSPPYG00000016683 (Pongo pygmaeus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPPYG00000016683 T40571_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.801
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.801
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.801
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.780
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.745
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPPYP00000018664 RRM 5 73
ENSPPYP00000018664 RRM 96 165

Links

Other RRM family RBPs
Other Pongo pygmaeus RBPs

179 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA49741 Xenopus laevis AAA49741 I 0.736
AAA49742 Xenopus laevis AAA49742 I 0.736
AAA49949 Xenopus laevis AAA49949 I 0.829
AAA49950 Xenopus laevis AAA49950 I 0.817
AAH45260 Xenopus laevis AAH45260 I 0.750
AAH72090 Xenopus laevis AAH72090 I 0.750
AAI69881 Xenopus laevis AAI69881 I 0.817
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.786
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.800
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.702
CBF67555 Xenopus laevis CBF67555 I 0.736
CBF67578 Xenopus laevis CBF67578 I 0.817
CBF67672 Xenopus laevis CBF67672 I 0.750
CBU92428 Xenopus laevis CBU92428 I 0.736
CBU92451 Xenopus laevis CBU92451 I 0.817
CBU92546 Xenopus laevis CBU92546 I 0.750
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.817
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.843
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.787
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.864
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.736
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.757
D4A8U2_RAT Rattus norvegicus ENSRNOG00000007252 I 0.703
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.730
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.793
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.702
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.711
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.711
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.743
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.771
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.711
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.865
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.704
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.711
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.706
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.716
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.718
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.730
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.771
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.823
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.757
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.738
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.709
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.786
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.757
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.743
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.707
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.786
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.709
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.872
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.764
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.786
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.773
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.757
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.771
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.730
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.786
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.786
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.750
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.806
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.771
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.928
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.702
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.771
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.793
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.757
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.773
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.704
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.786
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.711
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.771
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.865
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.738
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.709
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.764
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.779
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.786
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.764
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.771
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.786
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.723
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.757
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.771
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.779
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.786
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.771
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.764
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.779
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.743
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.700
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.830
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.816
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.757
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.921
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.786
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.743
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.738
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.794
ENSRNOG00000030250 Rattus norvegicus ENSRNOG00000030250 I 0.700
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.800
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.746
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.750
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.707
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.786
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.780
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.786
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.709
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.745
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.736
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.786
Gm8991 Mus musculus ENSMUSG00000059179 I 0.864
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.757
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.714
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.786
HNRNPA1 Homo sapiens ENSG00000135486 D 0.786
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.786
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.786
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.707
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.764
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.786
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.865
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.757
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.780
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.711
HNRNPA3 Homo sapiens ENSG00000170144 I 0.865
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.858
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.871
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.829
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.865
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.865
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.865
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.864
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.871
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.725
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.865
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.865
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.865
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.865
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.836
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.865
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.865
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.729
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.864
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.865
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.830
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.864
LOC100054206 Equus caballus ENSECAG00000006699 I 0.725
LOC100066794 Equus caballus ENSECAG00000023237 I 0.871
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.865
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.786
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.730
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.779
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.779
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.779
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.865
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.764
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.786
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.793
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.779
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.764
LOC781499 Bos taurus ENSBTAG00000021580 I 0.865
LOC785445 Bos taurus ENSBTAG00000025621 I 0.759
P17130 Xenopus laevis P17130 I 0.736
P51968 Xenopus laevis P51968 I 0.829
P51992 Xenopus laevis P51992 I 0.817
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.725
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.736
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.786
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.786
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.764
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.786
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.786
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.786
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.865
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.786
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.757
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.743
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.750
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.730