ENSPCAG00000001867 (Procavia capensis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPCAG00000001867 T40290_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.871
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.871
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.871
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.850
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.707
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPCAP00000001760 RRM 16 85
ENSPCAP00000001760 RRM 112 168

Links

Other RRM family RBPs
Other Procavia capensis RBPs

224 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.879
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.871
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.871
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.871
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.871
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.871
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.871
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.871
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.871
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.871
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.871
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.871
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.871
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.871
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.871
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.871
HNRNPA1 Homo sapiens ENSG00000135486 D 0.871
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.871
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.871
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.871
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.871
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.871
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.871
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.871
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.871
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.871
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.871
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.871
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.871
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.871
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.864
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.864
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.864
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.864
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.857
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.857
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.857
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.857
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.857
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.857
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.857
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.857
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.857
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.857
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.857
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.852
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.850
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.850
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.850
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.850
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.850
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.850
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.850
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.844
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.843
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.843
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.843
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.843
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.843
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.842
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.842
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.836
LOC785445 Bos taurus ENSBTAG00000025621 I 0.836
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.836
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.836
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.836
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.836
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.835
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.829
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.829
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.829
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.829
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.829
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.829
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.827
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.821
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.821
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.821
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.821
LOC100054206 Equus caballus ENSECAG00000006699 I 0.821
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.816
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.816
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.814
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.814
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.814
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.814
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.814
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.814
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.814
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.813
AAH45260 Xenopus laevis AAH45260 I 0.807
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.807
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.807
CBF67672 Xenopus laevis CBF67672 I 0.807
AAH72090 Xenopus laevis AAH72090 I 0.807
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.807
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.807
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.807
CBU92546 Xenopus laevis CBU92546 I 0.807
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.801
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.800
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.800
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.800
CBU92428 Xenopus laevis CBU92428 I 0.793
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.793
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.793
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.793
AAA49742 Xenopus laevis AAA49742 I 0.793
CBF67555 Xenopus laevis CBF67555 I 0.793
AAA49741 Xenopus laevis AAA49741 I 0.793
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.793
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.793
P17130 Xenopus laevis P17130 I 0.793
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.791
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.787
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.786
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.786
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.786
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.786
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.786
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.786
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.786
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.786
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.786
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.779
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.779
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.779
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.779
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.779
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.779
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.779
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.779
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.776
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.775
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.773
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.771
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.771
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.771
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.771
ENSRNOG00000023438 Rattus norvegicus ENSRNOG00000023438 I 0.771
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.771
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.771
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.766
HNRNPA3 Homo sapiens ENSG00000170144 I 0.766
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.766
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.766
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.766
LOC781499 Bos taurus ENSBTAG00000021580 I 0.766
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.766
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.766
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.766
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.766
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.766
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.766
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.766
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.766
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.766
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.766
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.766
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.766
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.766
Gm8991 Mus musculus ENSMUSG00000059179 I 0.764
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.764
P51968 Xenopus laevis P51968 I 0.764
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.764
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.764
AAA49949 Xenopus laevis AAA49949 I 0.764
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.764
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.764
LOC100066794 Equus caballus ENSECAG00000023237 I 0.764
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.764
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.764
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.764
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.764
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.764
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.759
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.757
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.755
AAA49950 Xenopus laevis AAA49950 I 0.754
CBF67578 Xenopus laevis CBF67578 I 0.754
P51992 Xenopus laevis P51992 I 0.754
AAI69881 Xenopus laevis AAI69881 I 0.754
CBU92451 Xenopus laevis CBU92451 I 0.754
zgc:66127 Danio rerio ENSDARG00000011020 I 0.750
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.750
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.750
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.748
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.746
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.745
ENSLAFG00000029171 Loxodonta africana ENSLAFG00000029171 I 0.745
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.743
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.743
ENSETEG00000001872 Echinops telfairi ENSETEG00000001872 I 0.741
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.741
ENSCJAG00000032970 Callithrix jacchus ENSCJAG00000032970 I 0.736
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.736
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.731
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.729
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.729
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.723
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.723
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.723
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.721
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.721
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.721
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.718
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.718
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.715
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.713
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.713
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.711
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.711
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.710
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.707
ENSSARG00000008882 Sorex araneus ENSSARG00000008882 I 0.707
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.706
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.704
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.704
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.703
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.703
ENSCAFG00000024812 Canis familiaris ENSCAFG00000024812 I 0.700
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.700
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.700
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.700