chr2.LjT32G18.130.nc (Lotus japonicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 chr2.LjT32G18.130.nc T55841_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
chr2.LjT32G18.130.nc RRM 47 115
chr2.LjT32G18.130.nc RRM 135 205

Links

Other RRM family RBPs
Other Lotus japonicus RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29629.m001425 Ricinus communis 29629.m001425 N 0.793
29917.m002004 Ricinus communis 29917.m002004 N 0.814
AT3G13224 Arabidopsis thaliana AT3G13224-TAIR-G N 0.764
AT5G40490 Arabidopsis thaliana AT5G40490-TAIR-G N 0.764
B9GFZ7_POPTR Populus trichocarpa POPTR_0001s37920 N 0.786
B9GI65_POPTR Populus trichocarpa POPTR_0001s35360 N 0.850
BRADI3G39090 Brachypodium distachyon BRADI3G39090 N 0.714
cassava24310.valid.m1 Manihot esculenta cassava24310.valid.m1 N 0.786
cassava7031.valid.m1 Manihot esculenta cassava7031.valid.m1 N 0.807
cassava897.valid.m1 Manihot esculenta cassava897.valid.m1 N 0.836
Cucsa.240780 Cucumis sativus Cucsa.240780 N 0.771
Cucsa.340040 Cucumis sativus Cucsa.340040 N 0.807
Glyma05g09040.1 Glycine max Glyma05g09040.1 N 0.964
Glyma16g07660.1 Glycine max Glyma16g07660.1 N 0.936
Glyma19g00530.1 Glycine max Glyma19g00530.1 N 0.943
Glyma19g10300.1 Glycine max Glyma19g10300.1 N 0.936
GRMZM2G050218 Zea mays GRMZM2G050218 N 0.729
GSVIVG00012784001 Vitis vinifera GSVIVG00012784001 N 0.779
GSVIVG00014729001 Vitis vinifera GSVIVG00014729001 N 0.779
GSVIVG00030120001 Vitis vinifera GSVIVG00030120001 N 0.700
GSVIVG00032402001 Vitis vinifera GSVIVG00032402001 N 0.843
LjSGA_018192.1 Lotus japonicus LjSGA_018192.1 N 0.700
MDP0000191633 Malus x domestica MDP0000191633 N 0.750
MDP0000202850 Malus x domestica MDP0000202850 N 0.757
MDP0000220851 Malus x domestica MDP0000220851 N 0.743
MDP0000270712 Malus x domestica MDP0000270712 N 0.779
MDP0000303054 Malus x domestica MDP0000303054 N 0.779
MDP0000303178 Malus x domestica MDP0000303178 N 0.721
mgf016066m Mimulus guttatus mgf016066m N 0.771
mgf019396m Mimulus guttatus mgf019396m N 0.707
PDK_20s1363571g001 Phoenix dactylifera PDK_20s1363571g001 N 0.736
PK13311.1 Cannabis sativa PK13311.1 N 0.807
PK22392.1 Cannabis sativa PK22392.1 N 0.757
ppa006963m Prunus persica ppa006963m N 0.757
ppa007179m Prunus persica ppa007179m N 0.814
XM_002870653.1 Arabidopsis lyrata fgenesh2_kg.7__3369__AT5G40490.1 N 0.757
XM_002882764.1 Arabidopsis lyrata fgenesh2_kg.3__1405__AT3G13224.1 N 0.757