PCBP1 (Tetraodon nigroviridis)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSTNIG00000012585 T19616_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
pcbp2
M211_0.6 		Danio rerio WWUCCC RNAcompete
Ray et al.(2013)
RNCMPT00246 		0.957
PCBP2
M043_0.6 		Homo sapiens CCYYCCH RNAcompete
Ray et al.(2013)
RNCMPT00044 		0.952
Pcbp1
M207_0.6 		Mus musculus CYUUCC RNAcompete
Ray et al.(2013)
RNCMPT00239 		0.894
PCBP1
M177_0.6 		Homo sapiens CCWWHCC RNAcompete
Ray et al.(2013)
RNCMPT00186 		0.894
Pcbp3
M188_0.6 		Mus musculus UUUYCC RNAcompete
Ray et al.(2013)
RNCMPT00215 		0.856
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000015556 KH 15 75
ENSTNIP00000015556 KH 99 162
ENSTNIP00000015556 KH 242 303

Links

Other KH family RBPs
Other Tetraodon nigroviridis RBPs

123 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R011627 Ailuropoda melanoleuca Ame_R011627 I 0.856
Ame_R007160 Ailuropoda melanoleuca Ame_R007160 I 0.766
Ame_R002707 Ailuropoda melanoleuca Ame_R002707 I 0.894
ENSACAG00000000783 Anolis carolinensis ENSACAG00000000783 I 0.952
PCBP3 Anolis carolinensis ENSACAG00000004607 I 0.856
ENSACAG00000009819 Anolis carolinensis ENSACAG00000009819 I 0.867
PCBP4 Anolis carolinensis ENSACAG00000011701 I 0.705
Q17QV0_BOVIN Bos taurus ENSBTAG00000030775 I 0.846
Q3SYT9_BOVIN Bos taurus ENSBTAG00000020757 I 0.952
PCBP4_BOVIN Bos taurus ENSBTAG00000018622 I 0.700
PCBP1_BOVIN Bos taurus ENSBTAG00000008985 I 0.894
estExt_gwp.C_3950051 Branchiostoma floridae estExt_gwp.C_3950051 I 0.714
fgenesh2_pg.scaffold_166000022 Branchiostoma floridae fgenesh2_pg.scaffold_166000022 I 0.714
PCBP1 Callithrix jacchus ENSCJAG00000004017 I 0.856
A6MKZ3_CALJA Callithrix jacchus ENSCJAG00000022539 I 0.878
ENSCJAG00000034075 Callithrix jacchus ENSCJAG00000034075 I 0.947
LOC100392590 Callithrix jacchus ENSCJAG00000018590 I 0.941
LOC100409398 Callithrix jacchus ENSCJAG00000007694 I 0.883
A6MK33_CALJA Callithrix jacchus ENSCJAG00000005783 I 0.700
LOC100408015 Callithrix jacchus ENSCJAG00000001903 I 0.856
PCBP2 Canis familiaris ENSCAFG00000006821 I 0.952
PCBP1 Canis familiaris ENSCAFG00000013845 I 0.872
PCBP4 Canis familiaris ENSCAFG00000010019 I 0.700
PCBP3 Cavia porcellus ENSCPOG00000003648 I 0.856
PCBP1 Cavia porcellus ENSCPOG00000013511 I 0.894
PCBP4 Cavia porcellus ENSCPOG00000014617 I 0.000
ENSCPOG00000000967 Cavia porcellus ENSCPOG00000000967 I 0.952
pcbp2 Danio rerio ENSDARG00000013184 D 0.957
pcbp3 Danio rerio ENSDARG00000054378 I 0.761
PCBP2 Dasypus novemcinctus ENSDNOG00000008688 I 0.952
Pcbp2 Dipodomys ordii ENSDORG00000001384 I 0.000
PCBP2 Echinops telfairi ENSETEG00000014741 I 0.848
PCBP2 Equus caballus ENSECAG00000022389 I 0.952
LOC100050101 Equus caballus ENSECAG00000012413 I 0.856
LOC100050579 Equus caballus ENSECAG00000002544 I 0.894
LOC100060660 Equus caballus ENSECAG00000024218 I 0.700
PCBP3 Felis catus ENSFCAG00000014812 I 0.723
PCBP3 Gallus gallus ENSGALG00000013155 I 0.872
PCBP3 Gallus gallus ENSGALG00000004394 I 0.819
ENSGACG00000006681 Gasterosteus aculeatus ENSGACG00000006681 I 0.947
ENSGACG00000003197 Gasterosteus aculeatus ENSGACG00000003197 I 0.968
PCBP3 Gasterosteus aculeatus ENSGACG00000014955 I 0.840
PCBP3 Gasterosteus aculeatus ENSGACG00000002266 I 0.851
PCBP4 Gasterosteus aculeatus ENSGACG00000002664 I 0.730
ENSGACG00000003044 Gasterosteus aculeatus ENSGACG00000003044 I 0.747
PCBP3 Gorilla gorilla ENSGGOG00000003683 I 0.856
PCBP1 Gorilla gorilla ENSGGOG00000028130 I 0.894
PCBP2 Gorilla gorilla ENSGGOG00000012613 I 0.952
PCBP4 Gorilla gorilla ENSGGOG00000012474 I 0.700
PCBP3 Homo sapiens ENSG00000183570 I 0.856
PCBP1 Homo sapiens ENSG00000169564 D 0.894
PCBP2 Homo sapiens ENSG00000197111 D 0.952
PCBP4 Homo sapiens ENSG00000090097 I 0.700
PCBP3 Loxodonta africana ENSLAFG00000020835 I 0.777
ENSLAFG00000025534 Loxodonta africana ENSLAFG00000025534 I 0.746
ENSLAFG00000013187 Loxodonta africana ENSLAFG00000013187 I 0.952
PCBP4 Macaca mulatta ENSMMUG00000022205 I 0.700
PCBP2 Macaca mulatta ENSMMUG00000006608 I 0.952
PCBP3 Macaca mulatta ENSMMUG00000003825 I 0.856
PCBP2 Macropus eugenii ENSMEUG00000001887 I 0.862
PCBP3 Macropus eugenii ENSMEUG00000012960 I 0.814
ENSMGAG00000006794 Meleagris gallopavo ENSMGAG00000006794 I 0.824
PCBP3 Meleagris gallopavo ENSMGAG00000001883 I 0.856
PCBP2 Microcebus murinus ENSMICG00000011651 I 0.952
PCBP1 Microcebus murinus ENSMICG00000002140 I 0.000
PCBP3 Microcebus murinus ENSMICG00000012679 I 0.761
ENSMODG00000020653 Monodelphis domestica ENSMODG00000020653 I 0.730
ENSMODG00000017748 Monodelphis domestica ENSMODG00000017748 I 0.867
ENSMODG00000000280 Monodelphis domestica ENSMODG00000000280 I 0.952
Pcbp3 Mus musculus ENSMUSG00000001120 D 0.856
Pcbp4 Mus musculus ENSMUSG00000023495 I 0.700
Pcbp1 Mus musculus ENSMUSG00000051695 D 0.894
Pcbp2 Mus musculus ENSMUSG00000056851 I 0.952
PCBP2 Myotis lucifugus ENSMLUG00000009971 I 0.814
PCBP1 Myotis lucifugus ENSMLUG00000014173 I 0.894
PCBP3 Myotis lucifugus ENSMLUG00000003074 I 0.723
PCBP2 Ochotona princeps ENSOPRG00000004680 I 0.952
PCBP3 Ochotona princeps ENSOPRG00000003431 I 0.806
PCBP4 Ornithorhynchus anatinus ENSOANG00000014110 I 0.711
ENSOCUG00000022490 Oryctolagus cuniculus ENSOCUG00000022490 I 0.952
ENSOCUG00000025394 Oryctolagus cuniculus ENSOCUG00000025394 I 0.000
PCBP1_RABIT Oryctolagus cuniculus ENSOCUG00000003634 I 0.894
ENSOCUG00000021452 Oryctolagus cuniculus ENSOCUG00000021452 I 0.712
PCBP3 Oryctolagus cuniculus ENSOCUG00000002696 I 0.856
PCBP4 Oryctolagus cuniculus ENSOCUG00000025336 I 0.700
ENSORLG00000014385 Oryzias latipes ENSORLG00000014385 I 0.787
PCBP3 Oryzias latipes ENSORLG00000000059 I 0.815
ENSORLG00000005176 Oryzias latipes ENSORLG00000005176 I 0.957
ENSORLG00000012872 Oryzias latipes ENSORLG00000012872 I 0.984
PCBP1 Otolemur garnettii ENSOGAG00000008557 I 0.735
PCBP3 Otolemur garnettii ENSOGAG00000008044 I 0.755
PCBP4 Pan troglodytes ENSPTRG00000014983 I 0.700
PCBP3 Pan troglodytes ENSPTRG00000014010 I 0.856
PCBP1 Pan troglodytes ENSPTRG00000012025 I 0.894
PCBP2 Pan troglodytes ENSPTRG00000005018 I 0.952
ENSPPYG00000013822 Pongo pygmaeus ENSPPYG00000013822 I 0.700
ENSPPYG00000012328 Pongo pygmaeus ENSPPYG00000012328 I 0.894
ENSPPYG00000004581 Pongo pygmaeus ENSPPYG00000004581 I 0.952
PCBP2 Pteropus vampyrus ENSPVAG00000012284 I 0.952
PCBP3 Pteropus vampyrus ENSPVAG00000000832 I 0.713
D4ADH2_RAT Rattus norvegicus ENSRNOG00000039295 I 0.836
ENSRNOG00000019487 Rattus norvegicus ENSRNOG00000019487 I 0.831
Pcbp3 Rattus norvegicus ENSRNOG00000001245 I 0.856
D4A8D6_RAT Rattus norvegicus ENSRNOG00000006713 I 0.760
ENSRNOG00000012044 Rattus norvegicus ENSRNOG00000012044 I 0.000
Pcbp4 Rattus norvegicus ENSRNOG00000012406 I 0.700
Pcbp1 Rattus norvegicus ENSRNOG00000017708 I 0.894
PCBP2 Sus scrofa ENSSSCG00000000274 I 0.952
PCBP1 Taeniopygia guttata ENSTGUG00000016232 I 0.771
PCBP3-2 Taeniopygia guttata ENSTGUG00000008158 I 0.872
PCBP4 Taeniopygia guttata ENSTGUG00000006393 I 0.000
ENSTRUG00000017789 Takifugu rubripes ENSTRUG00000017789 I 0.721
PCBP3 Takifugu rubripes ENSTRUG00000013604 I 0.846
ENSTRUG00000011419 Takifugu rubripes ENSTRUG00000011419 I 0.936
ENSTRUG00000009361 Takifugu rubripes ENSTRUG00000009361 I 0.995
PCBP4 Takifugu rubripes ENSTRUG00000007426 I 0.735
PCBP3 Takifugu rubripes ENSTRUG00000006280 I 0.851
PCBP2 Tarsius syrichta ENSTSYG00000009771 I 0.904
PCBP4 Tetraodon nigroviridis ENSTNIG00000017887 I 0.735
PCBP3 Tetraodon nigroviridis ENSTNIG00000010615 I 0.846
PCBP3 Tetraodon nigroviridis ENSTNIG00000008872 I 0.000
PCBP2 Tupaia belangeri ENSTBEG00000015592 I 0.771
PCBP2 Tursiops truncatus ENSTTRG00000017174 I 0.952
PCBP3 Tursiops truncatus ENSTTRG00000015075 I 0.856
AAH41241 Xenopus laevis AAH41241 I 0.952
AAH84195 Xenopus laevis AAH84195 I 0.952
CAB50743 Xenopus laevis CAB50743 I 0.952
CAD29864 Xenopus laevis CAD29864 I 0.952
pcbp3 Xenopus tropicalis ENSXETG00000012658 I 0.952