CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SRSF5
(
Loxodonta africana
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSLAFG00000005260
T37991_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
SRSF5
M357_0.6
Homo sapiens
Sequence logo not available
UGGGAGCRGUYRGCUCGY
SELEX
Cook et al.(2011)
985_9037021
0.729
SRSF5
M356_0.6
Homo sapiens
Sequence logo not available
UGGGAGCRGUYRGCUCGY
SELEX
Cook et al.(2011)
984_9037021
0.729
SRSF5
M355_0.6
Homo sapiens
Sequence logo not available
UGGGAGCRGUYRGCUCGY
SELEX
Cook et al.(2011)
983_9037021
0.729
B52
M334_0.6
Drosophila melanogaster
GRUCAACCNGGCGACMG
SELEX
Cook et al.(2011)
802_9111335
0.721
B52
M126_0.6
Drosophila melanogaster
GGASGRV
RNAcompete
Ray et al.(2013)
RNCMPT00134
0.721
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLAFP00000004404
RRM
6
68
VFIGRLNPAAREKDVERFFKGYGRIKDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSERVT
ENSLAFP00000004404
RRM
110
175
LIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIK
Links
Other
RRM
family RBPs
Other
Loxodonta africana
RBPs
130 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CHGG_07013
Chaetomium globosum
CHGG_07013
N
0.000
GLRG_07459
Colletotrichum graminicola
GLRG_07459
N
0.000
FGSG_10286
Fusarium graminearum
FGSG_10286
N
0.000
FOXG_05117
Fusarium oxysporum
FOXG_05117
N
0.000
FVEG_03015
Fusarium verticillioides
FVEG_03015
N
0.000
NCU08923
Neurospora crassa
NCU08923
N
0.000
VDBG_00590
Verticillium albo atrum
VDBG_00590
N
0.000
VDAG_00201
Verticillium dahliae
VDAG_00201
N
0.000