SRSF5 (Loxodonta africana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSLAFG00000005260 T37991_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF5
M357_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
985_9037021 		0.729
SRSF5
M356_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
984_9037021 		0.729
SRSF5
M355_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
983_9037021 		0.729
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.721
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000004404 RRM 6 68
ENSLAFP00000004404 RRM 110 175

Links

Other RRM family RBPs
Other Loxodonta africana RBPs

130 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CHGG_07013 Chaetomium globosum CHGG_07013 N 0.000
GLRG_07459 Colletotrichum graminicola GLRG_07459 N 0.000
FGSG_10286 Fusarium graminearum FGSG_10286 N 0.000
FOXG_05117 Fusarium oxysporum FOXG_05117 N 0.000
FVEG_03015 Fusarium verticillioides FVEG_03015 N 0.000
NCU08923 Neurospora crassa NCU08923 N 0.000
VDBG_00590 Verticillium albo atrum VDBG_00590 N 0.000
VDAG_00201 Verticillium dahliae VDAG_00201 N 0.000