CPEB3 (Procavia capensis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPCAG00000012417 T40389_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.841
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.833
orb2
M120_0.6 		Drosophila melanogaster KUUUKKK RNAcompete
Ray et al.(2013)
RNCMPT00126 		0.803
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPCAP00000011633 RRM 448 513
ENSPCAP00000011633 RRM 567 623

Links

Other RRM family RBPs
Other Procavia capensis RBPs

144 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.816
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.860
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.854
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.904
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.854
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.853
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.904
AGAP002296 Anopheles gambiae AGAP002296 I 0.725
amel4_ncbi_hmm4978 Apis mellifera amel4_ncbi_hmm4978 I 0.783
BGIBMGA001827 Bombyx mori BGIBMGA001827 I 0.796
CPEB2 Bos taurus ENSBTAG00000019847 I 0.860
CPEB3 Bos taurus ENSBTAG00000015450 I 0.904
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.854
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.832
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.825
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.854
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.860
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.904
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.860
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.848
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.904
e_gw1.24.94.1 Capitella teleta e_gw1.24.94.1 I 0.787
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.860
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.854
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.898
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.860
ENSCING00000001633 Ciona intestinalis ENSCING00000001633 I 0.743
CPEB2 Danio rerio ENSDARG00000052604 I 0.757
CPEB4 Danio rerio ENSDARG00000060495 I 0.847
cpeb3 Danio rerio ENSDARG00000060103 I 0.876
PASA_GEN_0800168 Daphnia pulex PASA_GEN_0800168 I 0.750
CPEB2 Dasypus novemcinctus ENSDNOG00000016610 N 0.718
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.860
GF10140 Drosophila ananassae FBgn0087181 I 0.810
GG15051 Drosophila erecta FBgn0107305 I 0.803
GH16131 Drosophila grimshawi FBgn0123602 I 0.809
orb2 Drosophila melanogaster FBgn0262573 D 0.803
GI12400 Drosophila mojavensis FBgn0135157 I 0.803
GL20808 Drosophila persimilis FBgn0158403 I 0.803
GA19094-RA Drosophila pseudoobscura FBgn0079092 I 0.803
GJ12289 Drosophila virilis FBgn0199538 I 0.803
GK17460 Drosophila willistoni FBgn0219459 I 0.803
GE21274 Drosophila yakuba FBgn0238542 I 0.803
CPEB4 Echinops telfairi ENSETEG00000012142 I 0.746
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.897
LOC100058918 Equus caballus ENSECAG00000016921 I 0.854
CPEB2 Equus caballus ENSECAG00000008722 I 0.860
CPEB3 Equus caballus ENSECAG00000000077 I 0.898
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.854
CPEB3 Gallus gallus ENSGALG00000006912 I 0.904
CPEB2 Gallus gallus ENSGALG00000014516 I 0.860
CPEB4 Gallus gallus ENSGALG00000014074 I 0.842
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.861
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.819
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.847
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.839
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.854
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.904
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.860
111676 Helobdella robusta 111676 I 0.717
CPEB3 Homo sapiens ENSG00000107864 I 0.904
CPEB2 Homo sapiens ENSG00000137449 D 0.860
CPEB4 Homo sapiens ENSG00000113742 D 0.854
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.739
ISCW010113 Ixodes scapularis ISCW010113 I 0.812
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.759
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.860
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.854
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.904
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.860
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.854
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.904
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.897
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.860
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.842
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.860
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.904
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.904
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.904
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.860
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.854
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.854
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.904
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.860
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.854
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.839
e_gw.6.76.1 Nematostella vectensis e_gw.6.76.1 I 0.759
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.854
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.853
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.898
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.842
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.860
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.904
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.854
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.839
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.832
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.875
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.847
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.860
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.854
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.860
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.904
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.854
PHUM335520 Pediculus humanus PHUM335520 I 0.794
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.904
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.854
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.860
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.854
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.854
CPEB2 Pteropus vampyrus ENSPVAG00000007732 I 0.831
CPEB3 Pteropus vampyrus ENSPVAG00000007664 I 0.824
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.854
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.904
D3ZHK8_RAT Rattus norvegicus ENSRNOG00000005043 I 0.806
CPEB3 Sorex araneus ENSSARG00000001994 I 0.898
CPEB2 Sorex araneus ENSSARG00000010559 I 0.765
CPEB4 Sorex araneus ENSSARG00000013389 I 0.854
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.854
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.804
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.804
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.904
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.860
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.854
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.904
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.860
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.825
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.847
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.839
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.862
CPEB3 Tarsius syrichta ENSTSYG00000003928 I 0.712
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.854
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.862
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.839
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.832
fgeneshTA2_pg.C_scaffold_8000081 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_8000081 I 0.717
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.854
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.904
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.860
CPEB3 Tursiops truncatus ENSTTRG00000012334 I 0.738
CPEB4 Vicugna pacos ENSVPAG00000010897 I 0.936
CPEB2 Vicugna pacos ENSVPAG00000006185 I 0.765
ADH10187 Xenopus laevis ADH10187 I 0.854
cpeb2 Xenopus tropicalis ENSXETG00000020324 I 0.921
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.904