POPTR_0016s04590 (Populus trichocarpa)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		POPTR_0016s04590 T00176_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0016s04590.1 CCCH ZF 35 61
POPTR_0016s04590.1 CCCH ZF 93 118
POPTR_0016s04590.1 KH 163 225
POPTR_0016s04590.1 CCCH ZF 251 276

Links

Other CCCH ZF,KH family RBPs
Other Populus trichocarpa RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 1.000
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.852
ppa009316m Prunus persica ppa009316m N 0.852
27843.m000162 Ricinus communis 27843.m000162 N 0.831
MDP0000217837 Malus x domestica MDP0000217837 N 0.831
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.824
27843.m000161 Ricinus communis 27843.m000161 N 0.824
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.817
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.810
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.810
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.810
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.803
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.803
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.797
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.796
MDP0000176924 Malus x domestica MDP0000176924 N 0.789
MDP0000202971 Malus x domestica MDP0000202971 N 0.789
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.789
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.789
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.775
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.775
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.775
SB06G032000 Sorghum bicolor Sb06g032000 N 0.768
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.768
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.768
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.768
ppa009199m Prunus persica ppa009199m N 0.768
mgf010445m Mimulus guttatus mgf010445m N 0.746
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.746
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.741
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.739
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.739
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.739
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.739
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.739
SB04G006450 Sorghum bicolor Sb04g006450 N 0.732
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.727
mgf003025m Mimulus guttatus mgf003025m N 0.711
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.704