ECT9 (Arabidopsis thaliana)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 AT1G27960-TAIR-G T61927_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT1G27960.1-P YTH 380 470

Links

Other YTH family RBPs
Other Arabidopsis thaliana RBPs

57 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.989
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.813
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.813
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.780
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.780
SB07G024500 Sorghum bicolor Sb07g024500 N 0.780
29890.m000285 Ricinus communis 29890.m000285 N 0.780
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.780
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.780
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.780
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.780
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.780
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.780
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.780
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.780
29929.m004643 Ricinus communis 29929.m004643 N 0.769
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.769
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.769
ppa002483m Prunus persica ppa002483m N 0.769
ppa002588m Prunus persica ppa002588m N 0.769
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.769
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.769
PK17832.1 Cannabis sativa PK17832.1 N 0.769
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.758
MDP0000617859 Malus x domestica MDP0000617859 N 0.758
PK01736.1 Cannabis sativa PK01736.1 N 0.758
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.758
MDP0000405927 Malus x domestica MDP0000405927 N 0.758
MDP0000287088 Malus x domestica MDP0000287088 N 0.758
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.747
MDP0000248088 Malus x domestica MDP0000248088 N 0.747
PK05579.1 Cannabis sativa PK05579.1 N 0.747
SB07G006330 Sorghum bicolor Sb07g006330 N 0.747
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.747
MDP0000552419 Malus x domestica MDP0000552419 N 0.747
mgf019821m Mimulus guttatus mgf019821m N 0.736
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.736
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.736
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.736
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.736
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.736
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.725
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.725
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.725
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.714
MDP0000189157 Malus x domestica MDP0000189157 N 0.714
ppa002677m Prunus persica ppa002677m N 0.714
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.714
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.703
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.703
SB06G027960 Sorghum bicolor Sb06g027960 N 0.703
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.703
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.703
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.703
mgf017987m Mimulus guttatus mgf017987m N 0.703
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.703
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.703