29929.m004643 (Ricinus communis)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 29929.m004643 T62293_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
29929.m004643 YTH 415 505

Links

Other YTH family RBPs
Other Ricinus communis RBPs

181 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.967
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.967
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.956
PK17832.1 Cannabis sativa PK17832.1 N 0.945
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.934
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.934
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.934
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.923
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.923
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.923
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.923
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.923
ppa002483m Prunus persica ppa002483m N 0.912
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.912
ppa002588m Prunus persica ppa002588m N 0.912
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.901
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.901
MDP0000617859 Malus x domestica MDP0000617859 N 0.901
MDP0000405927 Malus x domestica MDP0000405927 N 0.901
MDP0000287088 Malus x domestica MDP0000287088 N 0.901
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.890
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.890
MDP0000248088 Malus x domestica MDP0000248088 N 0.890
MDP0000552419 Malus x domestica MDP0000552419 N 0.890
PK01736.1 Cannabis sativa PK01736.1 N 0.879
SB07G024500 Sorghum bicolor Sb07g024500 N 0.868
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.868
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.857
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.857
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.857
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.835
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.835
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.824
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.813
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.813
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.813
29890.m000285 Ricinus communis 29890.m000285 N 0.813
SB07G006330 Sorghum bicolor Sb07g006330 N 0.813
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.802
mgf019821m Mimulus guttatus mgf019821m N 0.802
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.791
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.791
ppa018635m Prunus persica ppa018635m N 0.791
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.791
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.780
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.780
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.780
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.780
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.780
PK05579.1 Cannabis sativa PK05579.1 N 0.780
SB06G027960 Sorghum bicolor Sb06g027960 N 0.780
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.780
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.780
MDP0000132385 Malus x domestica MDP0000132385 N 0.780
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.780
MDP0000306387 Malus x domestica MDP0000306387 N 0.780
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.780
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.780
ppa002677m Prunus persica ppa002677m N 0.769
ppa003664m Prunus persica ppa003664m N 0.769
PK23104.1 Cannabis sativa PK23104.1 N 0.769
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.769
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.769
MDP0000171737 Malus x domestica MDP0000171737 N 0.769
ECT9 Arabidopsis thaliana AT1G27960-TAIR-G N 0.769
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.769
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.769
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.769
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.769
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.769
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.769
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.769
29889.m003364 Ricinus communis 29889.m003364 N 0.758
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.758
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.758
29955.m001158 Ricinus communis 29955.m001158 N 0.758
SB03G031190 Sorghum bicolor Sb03g031190 N 0.758
SB01G008170 Sorghum bicolor Sb01g008170 N 0.758
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.758
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.758
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.758
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.758
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.758
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.758
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.758
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.758
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.758
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.758
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.758
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.758
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.758
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.758
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.747
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.747
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.747
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.747
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.747
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.747
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.747
MDP0000286471 Malus x domestica MDP0000286471 N 0.747
MDP0000231231 Malus x domestica MDP0000231231 N 0.747
mgf017987m Mimulus guttatus mgf017987m N 0.747
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.747
mgf014143m Mimulus guttatus mgf014143m N 0.736
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.736
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.736
mgf015583m Mimulus guttatus mgf015583m N 0.736
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.736
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.736
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.736
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.736
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.736
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.736
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.736
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.736
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.736
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.736
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.736
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.736
MDP0000189157 Malus x domestica MDP0000189157 N 0.736
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.736
29950.m001140 Ricinus communis 29950.m001140 N 0.736
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.736
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.725
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.725
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.725
SB02G003990 Sorghum bicolor Sb02g003990 N 0.725
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.725
mgf013935m Mimulus guttatus mgf013935m N 0.725
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.725
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.714
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.714
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.714
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.714
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.714
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.714
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.714
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.714
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.714
B9N0D5_POPTR Populus trichocarpa POPTR_0004s23250 N 0.714
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.714
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.714
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.714
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.714
29765.m000746 Ricinus communis 29765.m000746 N 0.714
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.714
mgf013853m Mimulus guttatus mgf013853m N 0.714
MDP0000124048 Malus x domestica MDP0000124048 N 0.714
MDP0000256033 Malus x domestica MDP0000256033 N 0.714
MDP0000129009 Malus x domestica MDP0000129009 N 0.714
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.714
PK02315.1 Cannabis sativa PK02315.1 N 0.714
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.714
mgf009938m Mimulus guttatus mgf009938m N 0.714
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.714
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.714
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.714
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.714
MDP0000718677 Malus x domestica MDP0000718677 N 0.714
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.714
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.714
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.714
cassava14932.m1 Manihot esculenta cassava14932.m1 N 0.703
SB01G005500 Sorghum bicolor Sb01g005500 N 0.703
ppa003557m Prunus persica ppa003557m N 0.703
MDP0000488588 Malus x domestica MDP0000488588 N 0.703
cassava13322.valid.m1 Manihot esculenta cassava13322.valid.m1 N 0.703
cassava13323.valid.m1 Manihot esculenta cassava13323.valid.m1 N 0.703
cassava13324.valid.m1 Manihot esculenta cassava13324.valid.m1 N 0.703
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.703
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.703
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.703
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.703
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.703
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.703
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.703
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.703
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.703
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.703
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.703
PK26094.1 Cannabis sativa PK26094.1 N 0.703