ppa002677m (Prunus persica)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 ppa002677m T62561_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa002677m YTH 421 511

Links

Other YTH family RBPs
Other Prunus persica RBPs

109 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000189157 Malus x domestica MDP0000189157 N 0.934
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.901
PK05579.1 Cannabis sativa PK05579.1 N 0.890
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.890
29890.m000285 Ricinus communis 29890.m000285 N 0.879
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.857
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.835
mgf019821m Mimulus guttatus mgf019821m N 0.835
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.824
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.824
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.813
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.813
MDP0000248088 Malus x domestica MDP0000248088 N 0.791
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.791
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.791
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.791
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.791
PK17832.1 Cannabis sativa PK17832.1 N 0.791
MDP0000299155 Malus x domestica MDP0000299155 N 0.791
MDP0000552419 Malus x domestica MDP0000552419 N 0.791
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.780
ppa002483m Prunus persica ppa002483m N 0.780
ppa002588m Prunus persica ppa002588m N 0.780
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.780
MDP0000617859 Malus x domestica MDP0000617859 N 0.780
MDP0000287088 Malus x domestica MDP0000287088 N 0.780
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.780
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.780
MDP0000405927 Malus x domestica MDP0000405927 N 0.780
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.769
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.769
29929.m004643 Ricinus communis 29929.m004643 N 0.769
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.769
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.769
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.769
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.769
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.758
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.758
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.758
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.758
SB07G024500 Sorghum bicolor Sb07g024500 N 0.758
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.758
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.747
29889.m003364 Ricinus communis 29889.m003364 N 0.747
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.747
MDP0000286471 Malus x domestica MDP0000286471 N 0.747
ppa018635m Prunus persica ppa018635m N 0.747
MDP0000306387 Malus x domestica MDP0000306387 N 0.747
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.747
MDP0000231231 Malus x domestica MDP0000231231 N 0.747
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.747
MDP0000132385 Malus x domestica MDP0000132385 N 0.747
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.736
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.736
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.736
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.736
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.736
MDP0000171737 Malus x domestica MDP0000171737 N 0.736
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.736
SB07G006330 Sorghum bicolor Sb07g006330 N 0.736
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.736
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.736
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.725
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.725
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.725
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.725
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.725
29955.m001158 Ricinus communis 29955.m001158 N 0.725
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.725
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.725
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.725
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.725
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.725
PK01736.1 Cannabis sativa PK01736.1 N 0.725
PK23104.1 Cannabis sativa PK23104.1 N 0.725
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.725
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.725
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.725
ppa003664m Prunus persica ppa003664m N 0.725
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.714
PDK_20s1352821g002 Phoenix dactylifera PDK_20s1352821g002 N 0.714
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.714
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.714
ECT9 Arabidopsis thaliana AT1G27960-TAIR-G N 0.714
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.714
cassava16277.m1 Manihot esculenta cassava16277.m1 N 0.714
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.714
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.714
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.714
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.714
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.714
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.714
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.714
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.714
PK26094.1 Cannabis sativa PK26094.1 N 0.703
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.703
XM_002885156.1 Arabidopsis lyrata Al_scaffold_0003_1823 N 0.703
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.703
mgf015583m Mimulus guttatus mgf015583m N 0.703
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.703
mgf014143m Mimulus guttatus mgf014143m N 0.703
B9HX84_POPTR Populus trichocarpa POPTR_0010s16210 N 0.703
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.703
LjSGA_032005.1 Lotus japonicus LjSGA_032005.1 N 0.703
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.703
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.703
SB03G031190 Sorghum bicolor Sb03g031190 N 0.703
SB06G027960 Sorghum bicolor Sb06g027960 N 0.703
ECT6 Arabidopsis thaliana AT3G17330-TAIR-G N 0.703