B9HBC4_POPTR (Populus trichocarpa)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 POPTR_0006s07970 T62245_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0006s07970.1 YTH 425 515

Links

Other YTH family RBPs
Other Populus trichocarpa RBPs

155 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.945
29890.m000285 Ricinus communis 29890.m000285 N 0.934
PK05579.1 Cannabis sativa PK05579.1 N 0.901
mgf019821m Mimulus guttatus mgf019821m N 0.890
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.879
ppa002677m Prunus persica ppa002677m N 0.857
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.846
MDP0000189157 Malus x domestica MDP0000189157 N 0.846
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.846
GSVIVG00032236001 Vitis vinifera GSVIVG00032236001 N 0.846
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.835
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.835
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.835
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.835
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.824
SB07G024500 Sorghum bicolor Sb07g024500 N 0.824
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.813
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.802
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.802
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.802
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.802
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.802
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.802
PK17832.1 Cannabis sativa PK17832.1 N 0.791
MDP0000287088 Malus x domestica MDP0000287088 N 0.780
MDP0000405927 Malus x domestica MDP0000405927 N 0.780
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.780
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.780
29929.m004643 Ricinus communis 29929.m004643 N 0.780
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.780
ppa002588m Prunus persica ppa002588m N 0.780
MDP0000617859 Malus x domestica MDP0000617859 N 0.780
ppa002483m Prunus persica ppa002483m N 0.780
XM_002893450.1 Arabidopsis lyrata fgenesh2_kg.1__2951__AT1G27960.1 N 0.780
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.769
MDP0000248088 Malus x domestica MDP0000248088 N 0.769
MDP0000552419 Malus x domestica MDP0000552419 N 0.769
ECT9 Arabidopsis thaliana AT1G27960-TAIR-G N 0.769
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.769
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.769
SB01G008170 Sorghum bicolor Sb01g008170 N 0.769
SB06G027960 Sorghum bicolor Sb06g027960 N 0.769
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.758
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.758
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.758
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.758
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.758
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.758
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.747
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.747
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.747
SB07G006330 Sorghum bicolor Sb07g006330 N 0.747
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.747
MDP0000299155 Malus x domestica MDP0000299155 N 0.747
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.747
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.747
BRADI4G02150 Brachypodium distachyon BRADI4G02150 N 0.736
MDP0000124048 Malus x domestica MDP0000124048 N 0.736
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.736
SB02G003990 Sorghum bicolor Sb02g003990 N 0.736
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.736
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.736
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.736
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.736
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.736
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.736
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.736
PK01736.1 Cannabis sativa PK01736.1 N 0.736
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.736
MDP0000718677 Malus x domestica MDP0000718677 N 0.736
ppa003664m Prunus persica ppa003664m N 0.736
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.736
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.736
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.736
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.736
mgf009938m Mimulus guttatus mgf009938m N 0.736
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.736
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.736
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.736
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.736
mgf013935m Mimulus guttatus mgf013935m N 0.736
mgf013853m Mimulus guttatus mgf013853m N 0.736
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.736
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.736
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.736
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.736
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.736
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.736
ppa018635m Prunus persica ppa018635m N 0.725
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.725
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.725
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.725
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.725
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.725
SB01G005500 Sorghum bicolor Sb01g005500 N 0.725
SB03G031190 Sorghum bicolor Sb03g031190 N 0.725
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.725
LOC_Os03g20180 Oryza sativa LOC_Os03g20180 N 0.725
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.725
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.725
BGIOSIBCE010884 Oryza indica BGIOSIBCE010884 N 0.725
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.725
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.725
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.725
MDP0000171737 Malus x domestica MDP0000171737 N 0.725
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.725
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.725
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.725
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.725
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.725
Glyma15g14490.1 Glycine max Glyma15g14490.1 N 0.725
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.725
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.725
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.725
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.725
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.725
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.725
MDP0000129009 Malus x domestica MDP0000129009 N 0.725
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.725
MDP0000488588 Malus x domestica MDP0000488588 N 0.725
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.714
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.714
PK23716.1 Cannabis sativa PK23716.1 N 0.714
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.714
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.714
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.714
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.714
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.714
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.714
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.714
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.714
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.714
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.714
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.714
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.714
MDP0000231231 Malus x domestica MDP0000231231 N 0.714
MDP0000132385 Malus x domestica MDP0000132385 N 0.714
29950.m001140 Ricinus communis 29950.m001140 N 0.714
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.714
Medtr8g134440 Medicago truncatula Medtr8g134440 N 0.714
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.714
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.714
29889.m003364 Ricinus communis 29889.m003364 N 0.714
MDP0000306387 Malus x domestica MDP0000306387 N 0.714
MDP0000286471 Malus x domestica MDP0000286471 N 0.714
Glyma15g41960.1 Glycine max Glyma15g41960.1 N 0.703
Glyma07g36110.1 Glycine max Glyma07g36110.1 N 0.703
BRADI1G64100 Brachypodium distachyon BRADI1G64100 N 0.703
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.703
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.703
XM_002887730.1 Arabidopsis lyrata fgenesh2_kg.2__2224__AT1G79270.1 N 0.703
29955.m001158 Ricinus communis 29955.m001158 N 0.703
mgf017987m Mimulus guttatus mgf017987m N 0.703
ECT8 Arabidopsis thaliana AT1G79270-TAIR-G N 0.703
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.703